ProtoMol - an object-oriented component based framework for Molecular Dynamics simulations.

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ProtoMol Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• ProtoMol::AbstractEnumType< T, noCase >
• ProtoMol::Angle
• ProtoMol::AngleInfo
• ProtoMol::AngleSystemForceBase
  • ProtoMol::AngleSystemForce< TBoundaryConditions >
• ProtoMol::Array< T, N >
• ProtoMol::Array< T, N >::RefArray< N >
• ProtoMol::Array< T, N >::RefArray< 1 >
• ProtoMol::Array< T, 0 >
• ProtoMol::Array< T, 1 >
• ProtoMol::ArrayCellListStructure
• ProtoMol::ArraySize< N >
• ProtoMol::ArraySizes
• ProtoMol::Atom
• ProtoMol::AtomType
• ProtoMol::BankLennardJonesParameterTable
• ProtoMol::Bond
• ProtoMol::Bond::Constraint
• ProtoMol::BondSystemForceBase
  • ProtoMol::BondSystemForce< TBoundaryConditions >
• ProtoMol::BSpline
• ProtoMol::BSplineEnum
• ProtoMol::BSplineMOLLYIntegrator::AngleIndex
• ProtoMol::BSplineMOLLYIntegrator::BondIndex
• ProtoMol::C1SwitchingFunctionBase
  • ProtoMol::C1SwitchingFunction
• ProtoMol::C2SwitchingFunctionBase
  • ProtoMol::C2SwitchingFunction
• ProtoMol::CellListEnumerator< TBoundaryConditions, TCellManager >
• ProtoMol::CellListEnumerator< PeriodicBoundaryConditions, CubicCellManager >
• ProtoMol::CellListEnumerator< PeriodicBoundaryConditions, CubicCellManager >::CellPair
• ProtoMol::CellListEnumerator< VacuumBoundaryConditions, CubicCellManager >
• ProtoMol::CellListEnumerator< VacuumBoundaryConditions, CubicCellManager >::CellPair
• ProtoMol::CompareForce::CompareError
• ProtoMol::ComplementSwitchingFunctionBase
  • ProtoMol::ComplementSwitchingFunction< TOriginalSwitchingFunction >
• ProtoMol::Configuration
• ProtoMol::ConstraintValueEnum
• ProtoMol::ConstraintValueEnum::Enum2Type< e >
• ProtoMol::CoulombEwaldRealForce
• ProtoMol::CoulombEwaldRealTableForce
• ProtoMol::CoulombForce
• ProtoMol::CoulombForce::C1
• ProtoMol::CoulombForce::C2
• ProtoMol::CoulombForce::C3
• ProtoMol::CoulombForce::C4
• ProtoMol::CoulombMultiGridDirectForceBase
  • ProtoMol::CoulombMultiGridDirectForce< TKernel >
• ProtoMol::CoulombMultiGridDirectTableForceBase
  • ProtoMol::CoulombMultiGridDirectTableForce< TKernel >
• ProtoMol::CubicCellLocation
• ProtoMol::CubicCellManager
• ProtoMol::CutoffSwitchingFunctionBase
  • ProtoMol::CutoffSwitchingFunction
• ProtoMol::Cycles
• ProtoMol::Report::debug
• ProtoMol::DebugPostConstraint
• ProtoMol::DebugPreConstraint
• ProtoMol::DihedralSystemForceBase
  • ProtoMol::DihedralSystemForce< TBoundaryConditions >
• ProtoMol::ElectricFieldSystemForceBase
  • ProtoMol::ElectricFieldSystemForce< TBoundaryConditions, TSwitchingFunction, TConstraint >
• ProtoMol::Endian
• ProtoMol::Enum2ValueTraits< ValueType::BOOL >
• ProtoMol::Enum2ValueTraits< ValueType::FORCE >
• ProtoMol::Enum2ValueTraits< ValueType::INT >
• ProtoMol::Enum2ValueTraits< ValueType::INTEGRATOR >
• ProtoMol::Enum2ValueTraits< ValueType::REAL >
• ProtoMol::Enum2ValueTraits< ValueType::STRING >
• ProtoMol::Enum2ValueTraits< ValueType::UINT >
• ProtoMol::Enum2ValueTraits< ValueType::VECTOR >
• ProtoMol::Enum2ValueTraits< ValueType::VECTOR3D >
• ProtoMol::EquilibriumMOLLYIntegrator::HydrogenBond
• ProtoMol::ExclusionEnum
• ProtoMol::ExclusionPair
• ProtoMol::ExclusionTable
• ProtoMol::Factory< Type >
• ProtoMol::FactoryBase< Type >
• ProtoMol::FactoryBase< Force >
  • ProtoMol::ForceFactoryDetails
• ProtoMol::FactoryBase< GenericTopology >
  • ProtoMol::TopologyFactoryDetails
• ProtoMol::FactoryBase< Integrator >
  • ProtoMol::IntegratorFactoryDetails
• ProtoMol::FactoryBase< Output >
  • ProtoMol::OutputFactoryDetails
• ProtoMol::FactoryTraits< Force >
• ProtoMol::FactoryTraits< GenericTopology >
• ProtoMol::FactoryTraits< Integrator >
• ProtoMol::FactoryTraits< Output >
• ProtoMol::FFTComplex
• ProtoMol::FFTInternal
• ProtoMol::File
  • ProtoMol::Reader
    • ProtoMol::ConfigurationReader
    • ProtoMol::DCDTrajectoryReader
    • ProtoMol::iSGPARReader
    • ProtoMol::PARReader
    • ProtoMol::PDBReader
    • ProtoMol::PGMReader
    • ProtoMol::PPMReader
    • ProtoMol::PSFReader
    • ProtoMol::TRANSReader
    • ProtoMol::XSCReader
    • ProtoMol::XYZBinReader
    • ProtoMol::XYZReader
    • ProtoMol::XYZTrajectoryReader
  • ProtoMol::Writer
    • ProtoMol::DCDTrajectoryWriter
    • ProtoMol::PARWriter
    • ProtoMol::PDBWriter
    • ProtoMol::PGMWriter
    • ProtoMol::PNGWriter
    • ProtoMol::PPMWriter
    • ProtoMol::PSFWriter
    • ProtoMol::XFigWriter
    • ProtoMol::XSCWriter
    • ProtoMol::XYZBinWriter
    • ProtoMol::XYZTrajectoryWriter
    • ProtoMol::XYZWriter
• ProtoMol::TypeSelection::Float< size >
• ProtoMol::ForceFactoryDetails::ForceType
• ProtoMol::ForceGroup
• Format
• ProtoMol::GravitationForce
• ProtoMol::Grid< TInterpolation >
• ProtoMol::Grid< TInterpolation >::Int3D
• ProtoMol::Grid< TInterpolation >::Interpolation3D
• HapticSystemForceBase
• ProtoMol::HarmDihedralSystemForceBase
  • ProtoMol::HarmDihedralSystemForce< TBoundaryConditions >
• ProtoMol::HBondConstraint
• ProtoMol::HelpText
• ProtoMol::HelpTextFactory
• ProtoMol::Hermite
• ProtoMol::IMDElf
• ProtoMol::IMD::IMDEnergies
• ProtoMol::IMD::IMDheader
• ProtoMol::ImproperSystemForceBase
  • ProtoMol::ImproperSystemForce< TBoundaryConditions >
• ProtoMol::InputBoundaryConditionsIdentifier
• ProtoMol::InputCellManagerIdentifier
• ProtoMol::InputConfigIdentifier
• ProtoMol::InputDebugIdentifier
• ProtoMol::InputDihedralMultPSFIdentifier
• ProtoMol::InputFirststepIdentifier
• ProtoMol::InputIntegratorIdentifier
• ProtoMol::InputMaxPackagesIdentifier
• ProtoMol::InputMolVirialCalcIdentifier
• ProtoMol::InputNumstepsIdentifier
• ProtoMol::InputOutputfreqIdentifier
• ProtoMol::InputOutputIdentifier
• ProtoMol::InputParallelModeIdentifier
• ProtoMol::InputParallelPipeIdentifier
• ProtoMol::InputPARIdentifier
• ProtoMol::InputPDBScalingIdentifier
• ProtoMol::InputPositionsIdentifier
• ProtoMol::InputPosVel
• ProtoMol::InputPosVelEnum
• ProtoMol::InputPSFIdentifier
• ProtoMol::InputRattleEpsilonIdentifier
• ProtoMol::InputRattleIdentifier
• ProtoMol::InputRattleMaxIterIdentifier
• ProtoMol::InputReducedImageIdentifier
• ProtoMol::InputRemoveAngularMomentumIdentifier
• ProtoMol::InputRemoveLinearMomentumIdentifier
• ProtoMol::InputSeedIdentifier
• ProtoMol::InputShakeEpsilonIdentifier
• ProtoMol::InputShakeIdentifier
• ProtoMol::InputShakeMaxIterIdentifier
• ProtoMol::InputTemperatureIdentifier
• ProtoMol::InputUseBarrierIdentifier
• ProtoMol::InputValue< TBase, type, constraint >
• ProtoMol::InputVelocitiesIdentifier
• ProtoMol::InputVirialCalcIdentifier
• ProtoMol::TypeSelection::Int< size >
• ProtoMol::IntegratorDefinition
• ProtoMol::IntegratorFactoryDetails::IntegratorInput
• ProtoMol::iSGAngleSystemForceBase
  • ProtoMol::iSGAngleSystemForce< TBoundaryConditions >
• ProtoMol::iSGBondSystemForceBase
  • ProtoMol::iSGBondSystemForce< TBoundaryConditions >
• ProtoMol::iSGCoulombEwaldRealForce
• ProtoMol::iSGCoulombEwaldRealTableForce
• ProtoMol::iSGCoulombForce
• ProtoMol::iSGCoulombForce::C1
• ProtoMol::iSGCoulombForce::C2
• ProtoMol::iSGCoulombForce::C3
• ProtoMol::iSGCoulombForce::C4
• ProtoMol::iSGDihedralSystemForceBase
  • ProtoMol::iSGDihedralSystemForce< TBoundaryConditions >
• ProtoMol::iSGGrid< TInterpolation >
• ProtoMol::iSGGrid< TInterpolation >::Int3D
• ProtoMol::iSGGrid< TInterpolation >::Interpolation3D
• ProtoMol::iSGIdealGasCoulombForce
• ProtoMol::iSGIdealGasCoulombForce::C1
• ProtoMol::iSGIdealGasCoulombForce::C2
• ProtoMol::iSGIdealGasCoulombForce::C3
• ProtoMol::iSGIdealGasCoulombForce::C4
• ProtoMol::iSGIdealGasLennardJonesForce
• ProtoMol::iSGImproperSystemForceBase
  • ProtoMol::iSGImproperSystemForce< TBoundaryConditions >
• ProtoMol::iSGLennardJonesForce
• ProtoMol::iSGLennardJonesTableForce
• ProtoMol::iSGNonbondedFullEwaldSystemForceBase
  • ProtoMol::iSGNonbondedFullEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TSwitchingFunction >
• ProtoMol::iSGNonbondedPMEwaldSystemForceBase
  • ProtoMol::iSGNonbondedPMEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TInterpolation, TSwitchingFunction >
• ProtoMol::iSGOneAtomPair< TBoundaryConditions, TSwitchingFunction, TNonbondedForce, TConstraint >
• ProtoMol::iSGOneAtomPairFull< TBoundaryConditions, TSwitchingFunction, TNonbondedForce, TConstraint >
• ProtoMol::iSGOneAtomPairTwo< TBoundaryConditions, TSwitchingFunctionFirst, TNonbondedForceFirst, TSwitchingFunctionSecond, TNonbondedForceSecond, TConstraint >
• ProtoMol::iSGOneAtomPairTwoFull< TBoundaryConditions, TSwitchingFunctionFirst, TNonbondedForceFirst, TSwitchingFunctionSecond, TNonbondedForceSecond, TConstraint >
• ProtoMol::iSGPAR
• ProtoMol::iSGPAR::Angle
• ProtoMol::iSGPAR::AtomType
• ProtoMol::iSGPAR::Bond
• ProtoMol::iSGPAR::Dihedral
• ProtoMol::iSGPAR::Improper
• ProtoMol::iSGPAR::Nonbonded
• ProtoMol::Lagrange
• ProtoMol::LennardJonesForce
• ProtoMol::LennardJonesParameters
• ProtoMol::LennardJonesParameterTable
• ProtoMol::LennardJonesTableForce
• ProtoMol::ltstrNocase
• ProtoMol::MagneticDipoleForce
• ProtoMol::MagneticDipoleMirrorSystemForceBase
  • ProtoMol::MagneticDipoleMirrorSystemForce< TBoundaryConditions >
• ProtoMol::Makeable
  • ProtoMol::Force
    • ProtoMol::CompareForce
      • ProtoMol::ExtendedCompareForce
      • ProtoMol::SystemCompareForce
    • ProtoMol::ExtendedForce
      • ProtoMol::ExtendedCompareForce
      • ProtoMol::ExtendedTimeForce
      • ProtoMol::ExternalMagneticFieldExtendedForce
      • ProtoMol::FrictionExtendedForce
      • ProtoMol::PaulTrapExtendedForce< TBoundaryConditions >
    • ProtoMol::MetaForce
      • ProtoMol::WrapperMetaForce
    • ProtoMol::MollyForce
      • ProtoMol::NonbondedCutoffForce< TCellManager, TOneAtomPair, MollyForce, NonbondedCutoffMollyForce< TCellManager, TOneAtomPair > >
        • ProtoMol::NonbondedCutoffMollyForce< TCellManager, TOneAtomPair >
    • ProtoMol::SystemForce
      • ProtoMol::AngleSystemForce< TBoundaryConditions >
      • ProtoMol::BondSystemForce< TBoundaryConditions >
      • ProtoMol::ElectricFieldSystemForce< TBoundaryConditions, TSwitchingFunction, TConstraint >
      • ProtoMol::ExternalGravitationSystemForce
      • ProtoMol::HapticSystemForce
      • ProtoMol::iSGAngleSystemForce< TBoundaryConditions >
      • ProtoMol::iSGBondSystemForce< TBoundaryConditions >
      • ProtoMol::iSGMTorsionSystemForce< TBoundaryConditions >
        • ProtoMol::iSGDihedralSystemForce< TBoundaryConditions >
        • ProtoMol::iSGImproperSystemForce< TBoundaryConditions >
      • ProtoMol::iSGNonbondedFullEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TSwitchingFunction >
      • ProtoMol::iSGNonbondedPMEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TInterpolation, TSwitchingFunction >
      • ProtoMol::MagneticDipoleMirrorSystemForce< TBoundaryConditions >
      • ProtoMol::MTorsionSystemForce< TBoundaryConditions >
        • ProtoMol::DihedralSystemForce< TBoundaryConditions >
        • ProtoMol::HarmDihedralSystemForce< TBoundaryConditions >
        • ProtoMol::ImproperSystemForce< TBoundaryConditions >
      • ProtoMol::NonbondedCutoffForce< TCellManager, TOneAtomPair, SystemForce, NonbondedCutoffSystemForce< TCellManager, TOneAtomPair > >
        • ProtoMol::NonbondedCutoffSystemForce< TCellManager, TOneAtomPair >
      • ProtoMol::NonbondedFullEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TSwitchingFunction >
      • ProtoMol::NonbondedFullSystemForce< TOneAtomPair >
      • ProtoMol::NonbondedMultiGridSystemForce< TBoundaryConditions, TCellManager, TInterpolation, TKernel, direct, correction, smooth >
      • ProtoMol::NonbondedPMEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TInterpolation, TSwitchingFunction >
      • ProtoMol::NonbondedSimpleFullSystemForce< TOneAtomPair >
      • ProtoMol::SphericalSystemForce
      • ProtoMol::SystemCompareForce
      • ProtoMol::SystemTimeForce
    • ProtoMol::TimeForce
      • ProtoMol::ExtendedTimeForce
      • ProtoMol::SystemTimeForce
  • ProtoMol::GenericTopology
    • ProtoMol::SemiGenericTopology< TBoundaryConditions >
      • ProtoMol::Topology< TBoundaryConditions, TCellManager >
  • ProtoMol::Integrator
    • ProtoMol::NonStandardIntegrator
    • ProtoMol::StandardIntegrator
      • ProtoMol::MTSIntegrator
        • ProtoMol::DihedralHMCIntegrator
        • ProtoMol::ImpulseIntegrator
        • ProtoMol::MCIntegrator
          • ProtoMol::DLMCIntegrator
          • ProtoMol::HMCIntegrator
          • ProtoMol::ShadowHMCIntegrator
        • ProtoMol::MOLLYIntegrator
          • ProtoMol::BSplineMOLLYIntegrator
          • ProtoMol::EquilibriumMOLLYIntegrator
        • ProtoMol::UmbrellaIntegrator
      • ProtoMol::STSIntegrator
        • ProtoMol::BBKIntegrator
        • ProtoMol::DMDLeapfrogIntegrator
        • ProtoMol::iSGIntegrator
        • ProtoMol::LangevinImpulseIntegrator
        • ProtoMol::LeapfrogIntegrator
        • ProtoMol::NoseNVTLeapfrogIntegrator
        • ProtoMol::NPTVerletIntegrator
        • ProtoMol::NVTVerletIntegrator
        • ProtoMol::PaulTrapIntegrator
        • ProtoMol::PLeapfrogIntegrator
  • ProtoMol::Output
    • ProtoMol::OutputDCDTrajectory
    • ProtoMol::OutputFile
      • ProtoMol::OutputDiffusion
      • ProtoMol::OutputDihedrals
      • ProtoMol::OutputEnergies
      • ProtoMol::OutputISGProperties
      • ProtoMol::OutputMomentum
      • ProtoMol::OutputPaulTrap
      • ProtoMol::OutputTemperatures
    • ProtoMol::OutputFinalPDBPos
    • ProtoMol::OutputFinalPSF
    • ProtoMol::OutputFinalXSC
    • ProtoMol::OutputFinalXYZBinPos
    • ProtoMol::OutputFinalXYZBinVel
    • ProtoMol::OutputFinalXYZPos
    • ProtoMol::OutputFinalXYZVel
    • ProtoMol::OutputPDBFramePos
    • ProtoMol::OutputScreen
    • ProtoMol::OutputXYZTrajectoryForce
    • ProtoMol::OutputXYZTrajectoryPos
    • ProtoMol::OutputXYZTrajectoryVel
• ProtoMol::MakeableDefinition
• ProtoMol::Matrix3by3
• ProtoMol::Modifier
  • ProtoMol::iSGModifierPostForceChemostat
  • ProtoMol::iSGModifierPreForceChemostat
  • ProtoMol::ModifierAveraging
  • ProtoMol::ModifierFriction
  • ProtoMol::ModifierIncrementTimestep
  • ProtoMol::ModifierISG
  • ProtoMol::ModifierMetaRattleShake
    • ProtoMol::ModifierMetaRattle
      • ProtoMol::ModifierNPTRattleDetails
        • ProtoMol::ModifierNPTRattle< TIntegrator >
      • ProtoMol::ModifierNVTRattleDetails
        • ProtoMol::ModifierNVTRattle< TIntegrator >
      • ProtoMol::ModifierRattle
    • ProtoMol::ModifierMetaShake
      • ProtoMol::ModifierNPTShakeDetails
        • ProtoMol::ModifierNPTShake< TIntegrator >
      • ProtoMol::ModifierNVTShakeDetails
        • ProtoMol::ModifierNVTShake< TIntegrator >
      • ProtoMol::ModifierShake
  • ProtoMol::ModifierMollification
  • ProtoMol::ModifierPostForceBarostat< TIntegrator >
  • ProtoMol::ModifierPostForceThermostat< TIntegrator >
  • ProtoMol::ModifierPreForceBarostat< TIntegrator >
  • ProtoMol::ModifierPreForceThermostat< TIntegrator >
  • ProtoMol::ModifierRemoveAngularMomentum
  • ProtoMol::ModifierRemoveLinearMomentum
  • ProtoMol::ModifierUmbrella
  • ProtoMol::ModifierUpdateBeta
  • ProtoMol::ModifierUpdateBetaAndPush
• ProtoMol::ModifierISG::TransformMap
• ProtoMol::Molecule
• ProtoMol::MultiGrid< TInterpolation, TKernel, pbcX, pbcY, pbcZ >
• ProtoMol::MultiGrid< TInterpolation, TKernel, pbcX, pbcY, pbcZ >::Int3D
• ProtoMol::MultiGrid< TInterpolation, TKernel, pbcX, pbcY, pbcZ >::Interpolation3D
• ProtoMol::Report::MyStreamer
• ProtoMol::IMD::netint
• ProtoMol::NoConstraint
• ProtoMol::NonbondedCutoffForceBase
  • ProtoMol::NonbondedCutoffForce< TCellManager, TOneAtomPair, TForce, TImplForce >
  • ProtoMol::NonbondedCutoffForce< TCellManager, TOneAtomPair, MollyForce, NonbondedCutoffMollyForce< TCellManager, TOneAtomPair > >
  • ProtoMol::NonbondedCutoffForce< TCellManager, TOneAtomPair, SystemForce, NonbondedCutoffSystemForce< TCellManager, TOneAtomPair > >
• ProtoMol::NonbondedFullEwaldSystemForceBase
  • ProtoMol::NonbondedFullEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TSwitchingFunction >
• ProtoMol::NonbondedFullSystemForceBase
  • ProtoMol::NonbondedFullSystemForce< TOneAtomPair >
• ProtoMol::NonbondedMultiGridSystemForceBase
  • ProtoMol::NonbondedMultiGridSystemForce< TBoundaryConditions, TCellManager, TInterpolation, TKernel, direct, correction, smooth >
• ProtoMol::NonbondedPMEwaldSystemForceBase
  • ProtoMol::NonbondedPMEwaldSystemForce< TBoundaryConditions, TCellManager, real, reciprocal, correction, TInterpolation, TSwitchingFunction >
• ProtoMol::NonbondedSimpleFullSystemForceBase
  • ProtoMol::NonbondedSimpleFullSystemForce< TOneAtomPair >
• ProtoMol::NotSameMoleculeConstraint
• ProtoMol::ObjectDefinition
• ProtoMol::OneAtomPair< TBoundaryConditions, TSwitchingFunction, TNonbondedForce, TConstraint >
• ProtoMol::OneAtomPairFull< TBoundaryConditions, TSwitchingFunction, TNonbondedForce, TConstraint >
• ProtoMol::OneAtomPairTwo< TBoundaryConditions, TSwitchingFunctionFirst, TNonbondedForceFirst, TSwitchingFunctionSecond, TNonbondedForceSecond, TConstraint >
• ProtoMol::OneAtomPairTwoFull< TBoundaryConditions, TSwitchingFunctionFirst, TNonbondedForceFirst, TSwitchingFunctionSecond, TNonbondedForceSecond, TConstraint >
• ProtoMol::OneMollyPair< TBoundaryConditions, TSwitchingFunction, TNonbondedForce >
• ProtoMol::OneMollyPairTwo< TBoundaryConditions, TSwitchingFunctionFirst, TNonbondedForceFirst, TSwitchingFunctionSecond, TNonbondedForceSecond >
• ProtoMol::OutputCache
• ProtoMol::OutputCollection
• ProtoMol::PairIntSorted
• ProtoMol::PAR
• ProtoMol::PAR::Angle
• ProtoMol::PAR::Bond
• ProtoMol::PAR::Dihedral
• ProtoMol::PAR::Hbond
• ProtoMol::PAR::Improper
• ProtoMol::PAR::Nbfix
• ProtoMol::PAR::Nonbonded
• ProtoMol::Parallel
• ProtoMol::ParallelEnum
• ProtoMol::Parameter
• ProtoMol::PaulTrapExtendedForceBase
  • ProtoMol::PaulTrapExtendedForce< TBoundaryConditions >
• ProtoMol::PDB
• ProtoMol::PDB::PDBAtom
• ProtoMol::PeriodicBoundaryConditions
• ProtoMol::PGM
• ProtoMol::PPM
• ProtoMol::Proxy
  • ProtoMol::ScalarStructure
  • ProtoMol::Vector3DBlock
• ProtoMol::PSF
• ProtoMol::PSF::Acceptor
• ProtoMol::PSF::Angle
• ProtoMol::PSF::Atom
• ProtoMol::PSF::Bond
• ProtoMol::PSF::Dihedral
• ProtoMol::PSF::Donor
• ProtoMol::PSF::Improper
• ProtoMol::PSF::Ngrp
• ProtoMol::PSF::Nonbonded
• ProtoMol::RangeSwitchingFunctionBase
  • ProtoMol::RangeSwitchingFunction< TOriginalSwitchingFunction >
• ProtoMol::ReducedHessAngle
• ProtoMol::ReducedHessCoulomb
• ProtoMol::ReducedHessLennardJones
• ProtoMol::ReducedHessTraits< CoulombForce >
• ProtoMol::ReducedHessTraits< LennardJonesForce >
• ProtoMol::RefArray< T, N >
• ProtoMol::RefArray< T, 1 >
• ProtoMol::Report::reportlevel
• ProtoMol::SameMoleculeConstraint
• ProtoMol::TypeSelection::SelectType< size, A, B >
• ProtoMol::TypeSelection::SelectTypeCheck< A, size >
• ProtoMol::TypeSelection::SelectTypeCheckHelper< cmp, A >
• ProtoMol::TypeSelection::SelectTypeCheckHelper< true, A >
• ProtoMol::TypeSelection::SelectTypeHelper< cmp, A, B >
• ProtoMol::TypeSelection::SelectTypeHelper< true, A, B >
• ProtoMol::ShiftSwitchingFunctionBase
  • ProtoMol::ShiftSwitchingFunction
• ProtoMol::Stack< T >
• std::stringbuf
• std::stringstreambase
  • std::istringstream
  • std::ostringstream
  • std::stringstream
• ProtoMol::Text
• ProtoMol::ThermostatEnum
• ProtoMol::Timer
• ProtoMol::TimeRep
• ProtoMol::TimerStatistic
• ProtoMol::Torsion
• ProtoMol::TRANS
• ProtoMol::TRANS::AtomType
• ProtoMol::TripleInt
• ProtoMol::UniversalSwitchingFunctionBase
  • ProtoMol::UniversalSwitchingFunction
• ProtoMol::VacuumBoundaryConditions
• ProtoMol::Value
• ProtoMol::Value::PlaceHolder
  • ProtoMol::Value::Holder< ValueTrait, Constraint >
• ProtoMol::Value::Undefined
• ProtoMol::ValueEnum
• ProtoMol::ValueEnum::Enum2ValueType< e >
• ProtoMol::ValueTraits< bool >
• ProtoMol::ValueTraits< char[n]>
• ProtoMol::ValueTraits< const char[n]>
• ProtoMol::ValueTraits< int >
• ProtoMol::ValueTraits< Real >
• ProtoMol::ValueTraits< std::string >
• ProtoMol::ValueTraits< std::vector< Real > >
• ProtoMol::ValueTraits< unsigned int >
• ProtoMol::ValueTraits< ValueType::Force >
• ProtoMol::ValueTraits< ValueType::Integrator >
• ProtoMol::ValueTraits< Vector3D >
• ProtoMol::Vector< T >
• ProtoMol::Vector3D
• ProtoMol::VectorPacker< T, N >
• ProtoMol::XSC
• ProtoMol::XYZ
• zomplex

Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of Bergen, Norway.