ProtoMol - an object-oriented component based framework for Molecular Dynamics simulations.

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- a -

• aborting : ProtoMol::Report::MyStreamer
• allnodes : ProtoMol::Report::MyStreamer
• allnodesserial : ProtoMol::Report::MyStreamer
• allslavesserial : ProtoMol::Report::MyStreamer
• Array< T, 1 > : ProtoMol::Array< T, N >::RefArray< 1 >, ProtoMol::RefArray< T, 1 >
• Array< T, 2 > : ProtoMol::Array< T, N >::RefArray< 1 >, ProtoMol::RefArray< T, 1 >
• Array< T, N > : ProtoMol::Array< T, N >::RefArray< N >, ProtoMol::RefArray< T, N >
• Array< T, N+1 > : ProtoMol::Array< T, N >::RefArray< N >, ProtoMol::RefArray< T, N >
• ArraySize< N-1 > : ProtoMol::ArraySize< N >
• ArraySizes : ProtoMol::ArraySizes, ProtoMol::ArraySize< N >

- c -

• convert : ProtoMol::ValueTraits< ValueType::Force >, ProtoMol::ValueTraits< ValueType::Integrator >, ProtoMol::ValueTraits< std::vector< Real > >, ProtoMol::ValueTraits< Vector3D >, ProtoMol::ValueTraits< bool >, ProtoMol::ValueTraits< Real >, ProtoMol::ValueTraits< unsigned int >, ProtoMol::ValueTraits< int >, ProtoMol::ValueTraits< std::string >, ProtoMol::Matrix3by3

- d -

• dohint : ProtoMol::Report::MyStreamer
• donthint : ProtoMol::Report::MyStreamer

- e -

• endr : ProtoMol::Report::MyStreamer
• error : ProtoMol::Report::MyStreamer

- h -

• hint : ProtoMol::Report::MyStreamer

- i -

• iSGModifierPostForceChemostat : ProtoMol::iSGModifierPostForceChemostat, ProtoMol::iSGIntegrator
• iSGModifierPreForceChemostat : ProtoMol::iSGModifierPreForceChemostat, ProtoMol::iSGIntegrator

- m -

• ModifierAveraging : ProtoMol::ModifierAveraging, ProtoMol::MOLLYIntegrator
• ModifierFriction : ProtoMol::ModifierFriction, ProtoMol::NoseNVTLeapfrogIntegrator
• ModifierISG : ProtoMol::ModifierISG, ProtoMol::iSGIntegrator
• ModifierMollification : ProtoMol::ModifierMollification, ProtoMol::MOLLYIntegrator
• ModifierPostForceBarostat : ProtoMol::ModifierPostForceBarostat< TIntegrator >, ProtoMol::iSGIntegrator, ProtoMol::NPTVerletIntegrator
• ModifierPostForceThermostat : ProtoMol::ModifierPostForceThermostat< TIntegrator >, ProtoMol::iSGIntegrator, ProtoMol::NVTVerletIntegrator, ProtoMol::NPTVerletIntegrator
• ModifierPreForceBarostat : ProtoMol::ModifierPreForceBarostat< TIntegrator >, ProtoMol::iSGIntegrator, ProtoMol::NPTVerletIntegrator
• ModifierPreForceThermostat : ProtoMol::ModifierPreForceThermostat< TIntegrator >, ProtoMol::iSGIntegrator, ProtoMol::NVTVerletIntegrator, ProtoMol::NPTVerletIntegrator
• ModifierUpdateBeta : ProtoMol::ModifierUpdateBeta, ProtoMol::ShadowHMCIntegrator
• ModifierUpdateBetaAndPush : ProtoMol::ModifierUpdateBetaAndPush, ProtoMol::ShadowHMCIntegrator
• MTSIntegrator : ProtoMol::MTSIntegrator, ProtoMol::StandardIntegrator

- o -

• operator * : ProtoMol::Vector3D, ProtoMol::ReducedHessAngle, ProtoMol::Matrix3by3
• operator!= : ProtoMol::Vector3D, ProtoMol::Value, ProtoMol::Matrix3by3, ProtoMol::AbstractEnumType< T, noCase >
• operator< : ProtoMol::ExclusionPair, ProtoMol::CubicCellLocation, ProtoMol::Modifier, ProtoMol::BSplineMOLLYIntegrator::BondIndex, ProtoMol::Value, ProtoMol::PairIntSorted
• operator<< : ProtoMol::XSCWriter, ProtoMol::XYZWriter, ProtoMol::XYZTrajectoryWriter, ProtoMol::XYZBinWriter, ProtoMol::XFigWriter, ProtoMol::PSFWriter, ProtoMol::PPMWriter, ProtoMol::PNGWriter, ProtoMol::PGMWriter, ProtoMol::PDBWriter, ProtoMol::PARWriter, ProtoMol::DCDTrajectoryWriter, ProtoMol::InputValue< TBase, type, constraint >, ProtoMol::Vector3D, ProtoMol::Value, ProtoMol::TimerStatistic, ProtoMol::Timer, ProtoMol::TimeRep, ProtoMol::Report::MyStreamer, ProtoMol::ReducedHessAngle, ProtoMol::PDB::PDBAtom, ProtoMol::PAR::Hbond, ProtoMol::PAR::Nbfix, ProtoMol::PAR::Nonbonded, ProtoMol::PAR::Improper, ProtoMol::PAR::Dihedral, ProtoMol::PAR::Angle, ProtoMol::PAR::Bond, ProtoMol::Matrix3by3, ProtoMol::iSGPAR::Nonbonded, ProtoMol::iSGPAR::Improper, ProtoMol::iSGPAR::Dihedral, ProtoMol::iSGPAR::Angle, ProtoMol::iSGPAR::Bond, ProtoMol::AbstractEnumType< T, noCase >
• operator<= : ProtoMol::Value
• operator== : ProtoMol::CubicCellLocation, ProtoMol::Vector3D, ProtoMol::Value, ProtoMol::PairIntSorted, ProtoMol::Matrix3by3, ProtoMol::Array< T, N >, ProtoMol::AbstractEnumType< T, noCase >
• operator> : ProtoMol::Value
• operator>= : ProtoMol::Value
• operator>> : ProtoMol::XSCReader, ProtoMol::TRANSReader, ProtoMol::iSGPARReader, ProtoMol::XYZTrajectoryReader, ProtoMol::XYZReader, ProtoMol::XYZBinReader, ProtoMol::PSFReader, ProtoMol::PPMReader, ProtoMol::PGMReader, ProtoMol::PDBReader, ProtoMol::PARReader, ProtoMol::DCDTrajectoryReader, ProtoMol::ConfigurationReader, ProtoMol::InputPosVel, ProtoMol::Vector3D, ProtoMol::Value
• OutputFactoryDetails : ProtoMol::OutputFactoryDetails, ProtoMol::OutputCollection

- p -

• plain : ProtoMol::Report::MyStreamer

- q -

• quit : ProtoMol::Report::MyStreamer

- r -

• recoverable : ProtoMol::Report::MyStreamer
• RefArray< 2 > : ProtoMol::Array< T, N >::RefArray< 1 >
• RefArray< N+1 > : ProtoMol::Array< T, N >::RefArray< N >
• RefArray< T, 2 > : ProtoMol::RefArray< T, 1 >
• RefArray< T, N+1 > : ProtoMol::RefArray< T, N >

- t -

• Timer : ProtoMol::Timer, ProtoMol::TimeRep

- v -

• Vector< T > : ProtoMol::VectorPacker< T, N >
• VectorPacker< T, N-1 > : ProtoMol::VectorPacker< T, N >

- w -

• warning : ProtoMol::Report::MyStreamer

Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of Bergen, Norway.