|
| ExternalMagneticFieldExtendedForce (ProtoMol) | iSGGrid::Int3D (ProtoMol) | NonbondedCutoffMollyForce (ProtoMol) | PSFWriter (ProtoMol) |
| AbstractEnumType (ProtoMol) |
| iSGGrid::Interpolation3D (ProtoMol) | NonbondedCutoffSystemForce (ProtoMol) |
|
| Angle (ProtoMol) | Factory (ProtoMol) | iSGIdealGasCoulombForce (ProtoMol) | NonbondedFullEwaldSystemForce (ProtoMol) | RangeSwitchingFunction (ProtoMol) |
| AngleInfo (ProtoMol) | FactoryBase (ProtoMol) | iSGIdealGasCoulombForce::C1 (ProtoMol) | NonbondedFullEwaldSystemForceBase (ProtoMol) | RangeSwitchingFunctionBase (ProtoMol) |
| AngleSystemForce (ProtoMol) | FactoryTraits< Force > (ProtoMol) | iSGIdealGasCoulombForce::C2 (ProtoMol) | NonbondedFullSystemForce (ProtoMol) | Reader (ProtoMol) |
| AngleSystemForceBase (ProtoMol) | FactoryTraits< GenericTopology > (ProtoMol) | iSGIdealGasCoulombForce::C3 (ProtoMol) | NonbondedFullSystemForceBase (ProtoMol) | ReducedHessAngle (ProtoMol) |
| Array (ProtoMol) | FactoryTraits< Integrator > (ProtoMol) | iSGIdealGasCoulombForce::C4 (ProtoMol) | NonbondedMultiGridSystemForce (ProtoMol) | ReducedHessCoulomb (ProtoMol) |
| Array::RefArray (ProtoMol) | FactoryTraits< Output > (ProtoMol) | iSGIdealGasLennardJonesForce (ProtoMol) | NonbondedMultiGridSystemForceBase (ProtoMol) | ReducedHessLennardJones (ProtoMol) |
| Array::RefArray< 1 > (ProtoMol) | FFTComplex (ProtoMol) | iSGImproperSystemForce (ProtoMol) | NonbondedPMEwaldSystemForce (ProtoMol) | ReducedHessTraits< CoulombForce > (ProtoMol) |
| Array< T, 0 > (ProtoMol) | FFTInternal (ProtoMol) | iSGImproperSystemForceBase (ProtoMol) | NonbondedPMEwaldSystemForceBase (ProtoMol) | ReducedHessTraits< LennardJonesForce > (ProtoMol) |
| Array< T, 1 > (ProtoMol) | File (ProtoMol) | iSGIntegrator (ProtoMol) | NonbondedSimpleFullSystemForce (ProtoMol) | RefArray (ProtoMol) |
| ArrayCellListStructure (ProtoMol) | Float (ProtoMol::TypeSelection) | iSGLennardJonesForce (ProtoMol) | NonbondedSimpleFullSystemForceBase (ProtoMol) | RefArray< T, 1 > (ProtoMol) |
| ArraySize (ProtoMol) | Force (ProtoMol) | iSGLennardJonesTableForce (ProtoMol) | NonStandardIntegrator (ProtoMol) | reportlevel (ProtoMol::Report) |
| ArraySizes (ProtoMol) | ForceFactoryDetails (ProtoMol) | iSGModifierPostForceChemostat (ProtoMol) | NoseNVTLeapfrogIntegrator (ProtoMol) |
|
| Atom (ProtoMol) | ForceFactoryDetails::ForceType (ProtoMol) | iSGModifierPreForceChemostat (ProtoMol) | NotSameMoleculeConstraint (ProtoMol) | SameMoleculeConstraint (ProtoMol) |
| AtomType (ProtoMol) | ForceGroup (ProtoMol) | iSGMTorsionSystemForce (ProtoMol) | NPTVerletIntegrator (ProtoMol) | ScalarStructure (ProtoMol) |
|
| Format | iSGNonbondedFullEwaldSystemForce (ProtoMol) | NVTVerletIntegrator (ProtoMol) | SelectType (ProtoMol::TypeSelection) |
| BankLennardJonesParameterTable (ProtoMol) | FrictionExtendedForce (ProtoMol) | iSGNonbondedFullEwaldSystemForceBase (ProtoMol) |
| SelectTypeCheck (ProtoMol::TypeSelection) |
| BBKIntegrator (ProtoMol) |
| iSGNonbondedPMEwaldSystemForce (ProtoMol) | ObjectDefinition (ProtoMol) | SelectTypeCheckHelper (ProtoMol::TypeSelection) |
| Bond (ProtoMol) | GenericTopology (ProtoMol) | iSGNonbondedPMEwaldSystemForceBase (ProtoMol) | OneAtomPair (ProtoMol) | SelectTypeCheckHelper< true, A > (ProtoMol::TypeSelection) |
| Bond::Constraint (ProtoMol) | GravitationForce (ProtoMol) | iSGOneAtomPair (ProtoMol) | OneAtomPairFull (ProtoMol) | SelectTypeHelper (ProtoMol::TypeSelection) |
| BondSystemForce (ProtoMol) | Grid (ProtoMol) | iSGOneAtomPairFull (ProtoMol) | OneAtomPairTwo (ProtoMol) | SelectTypeHelper< true, A, B > (ProtoMol::TypeSelection) |
| BondSystemForceBase (ProtoMol) | Grid::Int3D (ProtoMol) | iSGOneAtomPairTwo (ProtoMol) | OneAtomPairTwoFull (ProtoMol) | SemiGenericTopology (ProtoMol) |
| BSpline (ProtoMol) | Grid::Interpolation3D (ProtoMol) | iSGOneAtomPairTwoFull (ProtoMol) | OneMollyPair (ProtoMol) | ShadowHMCIntegrator (ProtoMol) |
| BSplineEnum (ProtoMol) |
| iSGPAR (ProtoMol) | OneMollyPairTwo (ProtoMol) | ShiftSwitchingFunction (ProtoMol) |
| BSplineMOLLYIntegrator (ProtoMol) | HapticSystemForce (ProtoMol) | iSGPAR::Angle (ProtoMol) | ostringstream (std) | ShiftSwitchingFunctionBase (ProtoMol) |
| BSplineMOLLYIntegrator::AngleIndex (ProtoMol) | HapticSystemForceBase | iSGPAR::AtomType (ProtoMol) | Output (ProtoMol) | SphericalSystemForce (ProtoMol) |
| BSplineMOLLYIntegrator::BondIndex (ProtoMol) | HarmDihedralSystemForce (ProtoMol) | iSGPAR::Bond (ProtoMol) | OutputCache (ProtoMol) | Stack (ProtoMol) |
|
| HarmDihedralSystemForceBase (ProtoMol) | iSGPAR::Dihedral (ProtoMol) | OutputCollection (ProtoMol) | StandardIntegrator (ProtoMol) |
| C1SwitchingFunction (ProtoMol) | HBondConstraint (ProtoMol) | iSGPAR::Improper (ProtoMol) | OutputDCDTrajectory (ProtoMol) | stringbuf (std) |
| C1SwitchingFunctionBase (ProtoMol) | HelpText (ProtoMol) | iSGPAR::Nonbonded (ProtoMol) | OutputDiffusion (ProtoMol) | stringstream (std) |
| C2SwitchingFunction (ProtoMol) | HelpTextFactory (ProtoMol) | iSGPARReader (ProtoMol) | OutputDihedrals (ProtoMol) | stringstreambase (std) |
| C2SwitchingFunctionBase (ProtoMol) | Hermite (ProtoMol) | istringstream (std) | OutputEnergies (ProtoMol) | STSIntegrator (ProtoMol) |
| CellListEnumerator (ProtoMol) | HMCIntegrator (ProtoMol) |
| OutputFactoryDetails (ProtoMol) | SystemCompareForce (ProtoMol) |
| CellListEnumerator< PeriodicBoundaryConditions, CubicCellManager > (ProtoMol) |
| Lagrange (ProtoMol) | OutputFile (ProtoMol) | SystemForce (ProtoMol) |
| CellListEnumerator< PeriodicBoundaryConditions, CubicCellManager >::CellPair (ProtoMol) | IMDElf (ProtoMol) | LangevinImpulseIntegrator (ProtoMol) | OutputFinalPDBPos (ProtoMol) | SystemTimeForce (ProtoMol) |
| CellListEnumerator< VacuumBoundaryConditions, CubicCellManager > (ProtoMol) | IMDEnergies (ProtoMol::IMD) | LeapfrogIntegrator (ProtoMol) | OutputFinalPSF (ProtoMol) |
|
| CellListEnumerator< VacuumBoundaryConditions, CubicCellManager >::CellPair (ProtoMol) | IMDheader (ProtoMol::IMD) | LennardJonesForce (ProtoMol) | OutputFinalXSC (ProtoMol) | Text (ProtoMol) |
| CompareForce (ProtoMol) | ImproperSystemForce (ProtoMol) | LennardJonesParameters (ProtoMol) | OutputFinalXYZBinPos (ProtoMol) | ThermostatEnum (ProtoMol) |
| CompareForce::CompareError (ProtoMol) | ImproperSystemForceBase (ProtoMol) | LennardJonesParameterTable (ProtoMol) | OutputFinalXYZBinVel (ProtoMol) | TimeForce (ProtoMol) |
| ComplementSwitchingFunction (ProtoMol) | ImpulseIntegrator (ProtoMol) | LennardJonesTableForce (ProtoMol) | OutputFinalXYZPos (ProtoMol) | Timer (ProtoMol) |
| ComplementSwitchingFunctionBase (ProtoMol) | InputBoundaryConditionsIdentifier (ProtoMol) | ltstrNocase (ProtoMol) | OutputFinalXYZVel (ProtoMol) | TimeRep (ProtoMol) |
| Configuration (ProtoMol) | InputCellManagerIdentifier (ProtoMol) |
| OutputISGProperties (ProtoMol) | TimerStatistic (ProtoMol) |
| ConfigurationReader (ProtoMol) | InputConfigIdentifier (ProtoMol) | MagneticDipoleForce (ProtoMol) | OutputMomentum (ProtoMol) | Topology (ProtoMol) |
| ConstraintValueEnum (ProtoMol) | InputDebugIdentifier (ProtoMol) | MagneticDipoleMirrorSystemForce (ProtoMol) | OutputPaulTrap (ProtoMol) | TopologyFactoryDetails (ProtoMol) |
| ConstraintValueEnum::Enum2Type (ProtoMol) | InputDihedralMultPSFIdentifier (ProtoMol) | MagneticDipoleMirrorSystemForceBase (ProtoMol) | OutputPDBFramePos (ProtoMol) | Torsion (ProtoMol) |
| CoulombEwaldRealForce (ProtoMol) | InputFirststepIdentifier (ProtoMol) | Makeable (ProtoMol) | OutputScreen (ProtoMol) | TRANS (ProtoMol) |
| CoulombEwaldRealTableForce (ProtoMol) | InputIntegratorIdentifier (ProtoMol) | MakeableDefinition (ProtoMol) | OutputTemperatures (ProtoMol) | TRANS::AtomType (ProtoMol) |
| CoulombForce (ProtoMol) | InputMaxPackagesIdentifier (ProtoMol) | Matrix3by3 (ProtoMol) | OutputXYZTrajectoryForce (ProtoMol) | TRANSReader (ProtoMol) |
| CoulombForce::C1 (ProtoMol) | InputMolVirialCalcIdentifier (ProtoMol) | MCIntegrator (ProtoMol) | OutputXYZTrajectoryPos (ProtoMol) | TripleInt (ProtoMol) |
| CoulombForce::C2 (ProtoMol) | InputNumstepsIdentifier (ProtoMol) | MetaForce (ProtoMol) | OutputXYZTrajectoryVel (ProtoMol) |
|
| CoulombForce::C3 (ProtoMol) | InputOutputfreqIdentifier (ProtoMol) | Modifier (ProtoMol) |
| UmbrellaIntegrator (ProtoMol) |
| CoulombForce::C4 (ProtoMol) | InputOutputIdentifier (ProtoMol) | ModifierAveraging (ProtoMol) | PairIntSorted (ProtoMol) | UniversalSwitchingFunction (ProtoMol) |
| CoulombMultiGridDirectForce (ProtoMol) | InputParallelModeIdentifier (ProtoMol) | ModifierFriction (ProtoMol) | PAR (ProtoMol) | UniversalSwitchingFunctionBase (ProtoMol) |
| CoulombMultiGridDirectForceBase (ProtoMol) | InputParallelPipeIdentifier (ProtoMol) | ModifierIncrementTimestep (ProtoMol) | PAR::Angle (ProtoMol) |
|
| CoulombMultiGridDirectTableForce (ProtoMol) | InputPARIdentifier (ProtoMol) | ModifierISG (ProtoMol) | PAR::Bond (ProtoMol) | VacuumBoundaryConditions (ProtoMol) |
| CoulombMultiGridDirectTableForceBase (ProtoMol) | InputPDBScalingIdentifier (ProtoMol) | ModifierISG::TransformMap (ProtoMol) | PAR::Dihedral (ProtoMol) | Value (ProtoMol) |
| CubicCellLocation (ProtoMol) | InputPositionsIdentifier (ProtoMol) | ModifierMetaRattle (ProtoMol) | PAR::Hbond (ProtoMol) | Value::Holder (ProtoMol) |
| CubicCellManager (ProtoMol) | InputPosVel (ProtoMol) | ModifierMetaRattleShake (ProtoMol) | PAR::Improper (ProtoMol) | Value::PlaceHolder (ProtoMol) |
| CutoffSwitchingFunction (ProtoMol) | InputPosVelEnum (ProtoMol) | ModifierMetaShake (ProtoMol) | PAR::Nbfix (ProtoMol) | Value::Undefined (ProtoMol) |
| CutoffSwitchingFunctionBase (ProtoMol) | InputPSFIdentifier (ProtoMol) | ModifierMollification (ProtoMol) | PAR::Nonbonded (ProtoMol) | ValueEnum (ProtoMol) |
| Cycles (ProtoMol) | InputRattleEpsilonIdentifier (ProtoMol) | ModifierNPTRattle (ProtoMol) | Parallel (ProtoMol) | ValueEnum::Enum2ValueType (ProtoMol) |
|
| InputRattleIdentifier (ProtoMol) | ModifierNPTRattleDetails (ProtoMol) | ParallelEnum (ProtoMol) | ValueTraits< bool > (ProtoMol) |
| DCDTrajectoryReader (ProtoMol) | InputRattleMaxIterIdentifier (ProtoMol) | ModifierNPTShake (ProtoMol) | Parameter (ProtoMol) | ValueTraits< char[n]> (ProtoMol) |
| DCDTrajectoryWriter (ProtoMol) | InputReducedImageIdentifier (ProtoMol) | ModifierNPTShakeDetails (ProtoMol) | PARReader (ProtoMol) | ValueTraits< const char[n]> (ProtoMol) |
| debug (ProtoMol::Report) | InputRemoveAngularMomentumIdentifier (ProtoMol) | ModifierNVTRattle (ProtoMol) | PARWriter (ProtoMol) | ValueTraits< int > (ProtoMol) |
| DebugPostConstraint (ProtoMol) | InputRemoveLinearMomentumIdentifier (ProtoMol) | ModifierNVTRattleDetails (ProtoMol) | PaulTrapExtendedForce (ProtoMol) | ValueTraits< Real > (ProtoMol) |
| DebugPreConstraint (ProtoMol) | InputSeedIdentifier (ProtoMol) | ModifierNVTShake (ProtoMol) | PaulTrapExtendedForceBase (ProtoMol) | ValueTraits< std::string > (ProtoMol) |
| DihedralHMCIntegrator (ProtoMol) | InputShakeEpsilonIdentifier (ProtoMol) | ModifierNVTShakeDetails (ProtoMol) | PaulTrapIntegrator (ProtoMol) | ValueTraits< std::vector< Real > > (ProtoMol) |
| DihedralSystemForce (ProtoMol) | InputShakeIdentifier (ProtoMol) | ModifierPostForceBarostat (ProtoMol) | PDB (ProtoMol) | ValueTraits< unsigned int > (ProtoMol) |
| DihedralSystemForceBase (ProtoMol) | InputShakeMaxIterIdentifier (ProtoMol) | ModifierPostForceThermostat (ProtoMol) | PDB::PDBAtom (ProtoMol) | ValueTraits< ValueType::Force > (ProtoMol) |
| DLMCIntegrator (ProtoMol) | InputTemperatureIdentifier (ProtoMol) | ModifierPreForceBarostat (ProtoMol) | PDBReader (ProtoMol) | ValueTraits< ValueType::Integrator > (ProtoMol) |
| DMDLeapfrogIntegrator (ProtoMol) | InputUseBarrierIdentifier (ProtoMol) | ModifierPreForceThermostat (ProtoMol) | PDBWriter (ProtoMol) | ValueTraits< Vector3D > (ProtoMol) |
|
| InputValue (ProtoMol) | ModifierRattle (ProtoMol) | PeriodicBoundaryConditions (ProtoMol) | Vector (ProtoMol) |
| ElectricFieldSystemForce (ProtoMol) | InputVelocitiesIdentifier (ProtoMol) | ModifierRemoveAngularMomentum (ProtoMol) | PGM (ProtoMol) | Vector3D (ProtoMol) |
| ElectricFieldSystemForceBase (ProtoMol) | InputVirialCalcIdentifier (ProtoMol) | ModifierRemoveLinearMomentum (ProtoMol) | PGMReader (ProtoMol) | Vector3DBlock (ProtoMol) |
| Endian (ProtoMol) | Int (ProtoMol::TypeSelection) | ModifierShake (ProtoMol) | PGMWriter (ProtoMol) | VectorPacker (ProtoMol) |
| Enum2ValueTraits< ValueType::BOOL > (ProtoMol) | Integrator (ProtoMol) | ModifierUmbrella (ProtoMol) | PLeapfrogIntegrator (ProtoMol) |
|
| Enum2ValueTraits< ValueType::FORCE > (ProtoMol) | IntegratorDefinition (ProtoMol) | ModifierUpdateBeta (ProtoMol) | PNGWriter (ProtoMol) | WrapperMetaForce (ProtoMol) |
| Enum2ValueTraits< ValueType::INT > (ProtoMol) | IntegratorFactoryDetails (ProtoMol) | ModifierUpdateBetaAndPush (ProtoMol) | PPM (ProtoMol) | Writer (ProtoMol) |
| Enum2ValueTraits< ValueType::INTEGRATOR > (ProtoMol) | IntegratorFactoryDetails::IntegratorInput (ProtoMol) | Molecule (ProtoMol) | PPMReader (ProtoMol) |
|
| Enum2ValueTraits< ValueType::REAL > (ProtoMol) | iSGAngleSystemForce (ProtoMol) | MollyForce (ProtoMol) | PPMWriter (ProtoMol) | XFigWriter (ProtoMol) |
| Enum2ValueTraits< ValueType::STRING > (ProtoMol) | iSGAngleSystemForceBase (ProtoMol) | MOLLYIntegrator (ProtoMol) | Proxy (ProtoMol) | XSC (ProtoMol) |
| Enum2ValueTraits< ValueType::UINT > (ProtoMol) | iSGBondSystemForce (ProtoMol) | MTorsionSystemForce (ProtoMol) | PSF (ProtoMol) | XSCReader (ProtoMol) |
| Enum2ValueTraits< ValueType::VECTOR > (ProtoMol) | iSGBondSystemForceBase (ProtoMol) | MTSIntegrator (ProtoMol) | PSF::Acceptor (ProtoMol) | XSCWriter (ProtoMol) |
| Enum2ValueTraits< ValueType::VECTOR3D > (ProtoMol) | iSGCoulombEwaldRealForce (ProtoMol) | MultiGrid (ProtoMol) | PSF::Angle (ProtoMol) | XYZ (ProtoMol) |
| EquilibriumMOLLYIntegrator (ProtoMol) | iSGCoulombEwaldRealTableForce (ProtoMol) | MultiGrid::Int3D (ProtoMol) | PSF::Atom (ProtoMol) | XYZBinReader (ProtoMol) |
| EquilibriumMOLLYIntegrator::HydrogenBond (ProtoMol) | iSGCoulombForce (ProtoMol) | MultiGrid::Interpolation3D (ProtoMol) | PSF::Bond (ProtoMol) | XYZBinWriter (ProtoMol) |
| ExclusionEnum (ProtoMol) | iSGCoulombForce::C1 (ProtoMol) | MyStreamer (ProtoMol::Report) | PSF::Dihedral (ProtoMol) | XYZReader (ProtoMol) |
| ExclusionPair (ProtoMol) | iSGCoulombForce::C2 (ProtoMol) |
| PSF::Donor (ProtoMol) | XYZTrajectoryReader (ProtoMol) |
| ExclusionTable (ProtoMol) | iSGCoulombForce::C3 (ProtoMol) | netint (ProtoMol::IMD) | PSF::Improper (ProtoMol) | XYZTrajectoryWriter (ProtoMol) |
| ExtendedCompareForce (ProtoMol) | iSGCoulombForce::C4 (ProtoMol) | NoConstraint (ProtoMol) | PSF::Ngrp (ProtoMol) | XYZWriter (ProtoMol) |
| ExtendedForce (ProtoMol) | iSGDihedralSystemForce (ProtoMol) | NonbondedCutoffForce (ProtoMol) | PSF::Nonbonded (ProtoMol) |
|
| ExtendedTimeForce (ProtoMol) | iSGDihedralSystemForceBase (ProtoMol) | NonbondedCutoffForceBase (ProtoMol) | PSFReader (ProtoMol) | zomplex |
| ExternalGravitationSystemForce (ProtoMol) | iSGGrid (ProtoMol) |
Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of
Bergen, Norway.
