ProtoMol - an object-oriented component based framework for Molecular Dynamics simulations.
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ProtoMol::Topology< TBoundaryConditions, TCellManager > Member List

This is the complete list of members for ProtoMol::Topology< TBoundaryConditions, TCellManager >, including all inherited members.
adjustAlias(T *obj) const ProtoMol::Makeable [inline, protected]
adjustWithDefaultParameters(std::vector< Value > &values, const Configuration *) const ProtoMol::Makeable [inline, virtual]
anglesProtoMol::GenericTopology
atomsProtoMol::GenericTopology
atomTypesProtoMol::GenericTopology
bondRattleShakeConstraintsProtoMol::GenericTopology
bondsProtoMol::GenericTopology
boundaryConditionsProtoMol::SemiGenericTopology< TBoundaryConditions >
BoundaryConditions typedefProtoMol::SemiGenericTopology< TBoundaryConditions >
cellListsProtoMol::Topology< TBoundaryConditions, TCellManager > [mutable]
CellManager typedefProtoMol::Topology< TBoundaryConditions, TCellManager >
cellManagerProtoMol::Topology< TBoundaryConditions, TCellManager >
checkMoleculePairDistances(const Vector3DBlock &positions) const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
checkParameters(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::Makeable
checkParameters(const std::vector< Value > &values) const ProtoMol::Makeable
checkParameterTypes(const std::vector< Value > &values) const ProtoMol::Makeable
copy(T *obj)ProtoMol::Makeable [inline, static]
coulombScalingFactorProtoMol::GenericTopology
degreesOfFreedomProtoMol::GenericTopology
dihedralsProtoMol::GenericTopology
doMake(std::string &errMsg, std::vector< Value > values) const ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline, private, virtual]
Enumerator typedefProtoMol::Topology< TBoundaryConditions, TCellManager >
excludeProtoMol::GenericTopology
exclusionsProtoMol::GenericTopology
GenericTopology()ProtoMol::GenericTopology
GenericTopology(Real c, const ExclusionType &e)ProtoMol::GenericTopology
getAlias() const ProtoMol::Makeable
getBoundaryConditionsBox(Vector3D &minbb, Vector3D &maxbb) const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
getBoundingbox(const Vector3DBlock &positions, Vector3D &minbb, Vector3D &maxbb) const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
getDefaults(const Vector3DBlock &positions) const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
getDefinition() const ProtoMol::Makeable [virtual]
getId() const ProtoMol::Makeable
getIdNoAlias() const ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline, virtual]
getKeyword()ProtoMol::GenericTopology [inline, static]
getParameters(std::vector< Parameter > &parameters) const ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline, virtual]
ProtoMol::SemiGenericTopology::getParameters() const ProtoMol::Makeable
getParameterSize() const ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline, virtual]
getScope() const ProtoMol::GenericTopology [inline, virtual]
getText() const ProtoMol::Makeable [inline, virtual]
getVolume() const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
getVolume(const Vector3DBlock &positions) const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
impropersProtoMol::GenericTopology
isgLJParmsProtoMol::GenericTopology
iSGNumMolsProtoMol::GenericTopology
keywordProtoMol::GenericTopology [static]
lennardJonesParametersProtoMol::GenericTopology
make(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::GenericTopology
maxProtoMol::GenericTopology [mutable]
minProtoMol::GenericTopology [mutable]
minimalDifference(const Vector3D &c1, const Vector3D &c2) const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
minimalImage(Vector3DBlock &positions)ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
minimalMolecularDistancesProtoMol::GenericTopology
minimalPosition(const Vector3D &c) const ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
moleculesProtoMol::GenericTopology
print(const Vector3DBlock *positions=NULL) const ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline, virtual]
rescaleVolume(Real fac)ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
scopeProtoMol::GenericTopology [static]
SemiGenericTopology()ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline]
SemiGenericTopology(Real csf, const ExclusionType &e, const TBoundaryConditions &b)ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline]
setAlias(const std::string &id)ProtoMol::Makeable
timeProtoMol::GenericTopology [mutable]
Topology()ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline]
Topology(Real csf, const ExclusionType &e, const TBoundaryConditions &b, const TCellManager &c)ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline]
uncacheCellList()ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline, virtual]
updateCellLists(const Vector3DBlock *positions) const ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline]
~GenericTopology()ProtoMol::GenericTopology [inline, virtual]
~Makeable()ProtoMol::Makeable [inline, virtual]
~SemiGenericTopology()ProtoMol::SemiGenericTopology< TBoundaryConditions > [inline, virtual]
~Topology()ProtoMol::Topology< TBoundaryConditions, TCellManager > [inline, virtual]
Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of Bergen, Norway.