ProtoMol - an object-oriented component based framework for Molecular Dynamics simulations.
Main Page | Namespace List | Class Hierarchy | Alphabetical List | Class List | File List | Namespace Members | Class Members | File Members

ProtoMol::OutputDihedrals Member List

This is the complete list of members for ProtoMol::OutputDihedrals, including all inherited members.
addDoKeyword() const ProtoMol::Output [inline, virtual]
adjustAlias(T *obj) const ProtoMol::Makeable [inline, protected]
adjustWithDefaultParameters(std::vector< Value > &values, const Configuration *config) const ProtoMol::OutputDihedrals [virtual]
checkParameters(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::Makeable
checkParameters(const std::vector< Value > &values) const ProtoMol::Makeable
checkParameterTypes(const std::vector< Value > &values) const ProtoMol::Makeable
close()ProtoMol::OutputFile [protected]
confstringsProtoMol::OutputDihedrals [private]
confstringsCounterProtoMol::OutputDihedrals [private]
copy(T *obj)ProtoMol::Makeable [inline, static]
doFinalize(int step)ProtoMol::OutputDihedrals [private, virtual]
doFlushCache()ProtoMol::OutputFile [inline, protected, virtual]
doInitialize()ProtoMol::OutputDihedrals [private, virtual]
doMake(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::OutputDihedrals [private, virtual]
doRunCached(int step)ProtoMol::OutputDihedrals [private, virtual]
finalize(int step)ProtoMol::Output
first() const ProtoMol::Output [inline]
getAlias() const ProtoMol::Makeable
getbackbonedihedrals()ProtoMol::OutputDihedrals
getDefinition() const ProtoMol::Makeable [virtual]
getdihedralsfromatomset()ProtoMol::OutputDihedrals
getFirstStep() const ProtoMol::Output [inline]
getId() const ProtoMol::Makeable
getIdNoAlias() const ProtoMol::OutputDihedrals [inline, virtual]
getLastStep() const ProtoMol::Output [inline]
getNext() const ProtoMol::Output [inline]
getOutputFreq() const ProtoMol::Output [inline]
getParameters(std::vector< Parameter > &parameter) const ProtoMol::OutputDihedrals [virtual]
ProtoMol::Output::getParameters() const ProtoMol::Makeable
getParameterSize() const ProtoMol::OutputDihedrals [inline, virtual]
getScope() const ProtoMol::Output [inline, virtual]
getText() const ProtoMol::Makeable [inline, virtual]
initialize(const Configuration *config, const Integrator *integrator, const GenericTopology *topo, const Vector3DBlock *pos, const Vector3DBlock *vel, const ScalarStructure *energies)ProtoMol::Output
isIdDefined(const Configuration *config) const ProtoMol::Output [virtual]
keywordProtoMol::OutputDihedrals [static]
make(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::Output
myBufferProtoMol::OutputFile [protected]
myCacheProtoMol::Output [protected]
myConfigProtoMol::Output [protected]
myConfstringsProtoMol::OutputDihedrals [private]
myDCDProtoMol::OutputDihedrals [private]
myDihedralIndexProtoMol::OutputDihedrals [private]
myDihedralsProtoMol::OutputDihedrals [private]
myDihedralsSetProtoMol::OutputDihedrals [private]
myDihedralsSetfileProtoMol::OutputDihedrals [private]
myEnergiesProtoMol::Output [protected]
myFilenameProtoMol::OutputFile [protected]
myIntegratorProtoMol::Output [protected]
myMaximasProtoMol::OutputDihedrals [private]
myMinimasProtoMol::OutputDihedrals [private]
myOutputFreqProtoMol::Output [protected]
myPositionsProtoMol::Output [protected]
myTopologyProtoMol::Output [protected]
myVelocitiesProtoMol::Output [protected]
open()ProtoMol::OutputFile [protected]
Output()ProtoMol::Output
Output(int freq)ProtoMol::Output
OutputDihedrals()ProtoMol::OutputDihedrals
OutputDihedrals(const std::string &filename, int freq, int cacheFreq, int cacheSize, Real closeTime, int index, bool dihset, std::string dsetfile)ProtoMol::OutputDihedrals
OutputFile()ProtoMol::OutputFile
OutputFile(const std::string &filename, int freq, int cacheFreq, int cacheSize, Real closeTime)ProtoMol::OutputFile
run(int step)ProtoMol::Output
scopeProtoMol::Output [static]
setAlias(const std::string &id)ProtoMol::Makeable
setCache(const OutputCache *cache)ProtoMol::Output
~Makeable()ProtoMol::Makeable [inline, virtual]
~OutputDihedrals()ProtoMol::OutputDihedrals
~OutputFile()ProtoMol::OutputFile [virtual]
Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of Bergen, Norway.