ProtoMol - an object-oriented component based framework for Molecular Dynamics simulations.
Main Page | Namespace List | Class Hierarchy | Alphabetical List | Class List | File List | Namespace Members | Class Members | File Members

ProtoMol::OutputDCDTrajectory Class Reference

#include <OutputDCDTrajectory.h>

Inheritance diagram for ProtoMol::OutputDCDTrajectory:

ProtoMol::Output ProtoMol::Makeable List of all members.

Public Member Functions

 OutputDCDTrajectory ()
 OutputDCDTrajectory (const std::string &filename, int freq)
virtual ~OutputDCDTrajectory ()
virtual std::string getIdNoAlias () const
virtual unsigned int getParameterSize () const
virtual void getParameters (std::vector< Parameter > &parameter) const
virtual bool adjustWithDefaultParameters (std::vector< Value > &values, const Configuration *config) const

Static Public Attributes

const std::string keyword

Private Member Functions

virtual Output * doMake (std::string &errMsg, const std::vector< Value > &values) const
virtual void doInitialize ()
virtual void doRun (int step)
virtual void doFinalize (int step)

Private Attributes

DCDTrajectoryWriter * myDCD

Constructor & Destructor Documentation

ProtoMol::OutputDCDTrajectory::OutputDCDTrajectory (   ) 
 

ProtoMol::OutputDCDTrajectory::OutputDCDTrajectory (  const std::string &  filename,
int  freq
) 
 

ProtoMol::OutputDCDTrajectory::~OutputDCDTrajectory (   )  [virtual]
 

Member Function Documentation

bool ProtoMol::OutputDCDTrajectory::adjustWithDefaultParameters (  std::vector< Value > &  values,
const Configuration *  config
)  const [virtual]
 

Reimplemented from ProtoMol::Makeable.

void ProtoMol::OutputDCDTrajectory::doFinalize (  int  step  )  [private, virtual]
 

Hook method of finalize, implemented in the concrete class.

Implements ProtoMol::Output.

void ProtoMol::OutputDCDTrajectory::doInitialize (   )  [private, virtual]
 

Hook method of initialize, implemented in the concrete class.

Implements ProtoMol::Output.

virtual Output* ProtoMol::OutputDCDTrajectory::doMake (  std::string &  errMsg,
const std::vector< Value > &  values
)  const [private, virtual]
 

Implements ProtoMol::Output.

void ProtoMol::OutputDCDTrajectory::doRun (  int  step  )  [private, virtual]
 

Hook method of run, implemented in the concrete class.

Implements ProtoMol::Output.

virtual std::string ProtoMol::OutputDCDTrajectory::getIdNoAlias (   )  const [inline, virtual]
 

Implements ProtoMol::Makeable.

void ProtoMol::OutputDCDTrajectory::getParameters (  std::vector< Parameter > &  parameter  )  const [virtual]
 

retrieve all parameters

Implements ProtoMol::Makeable.

virtual unsigned int ProtoMol::OutputDCDTrajectory::getParameterSize (   )  const [inline, virtual]
 

number of parameters

Implements ProtoMol::Makeable.

Member Data Documentation

const string ProtoMol::OutputDCDTrajectory::keyword [static]
 

DCDTrajectoryWriter* ProtoMol::OutputDCDTrajectory::myDCD [private]
 

The documentation for this class was generated from the following files: Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of Bergen, Norway.