ProtoMol - an object-oriented component based framework for Molecular Dynamics simulations.
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ProtoMol::OutputDCDTrajectory Member List

This is the complete list of members for ProtoMol::OutputDCDTrajectory, including all inherited members.
addDoKeyword() const ProtoMol::Output [inline, virtual]
adjustAlias(T *obj) const ProtoMol::Makeable [inline, protected]
adjustWithDefaultParameters(std::vector< Value > &values, const Configuration *config) const ProtoMol::OutputDCDTrajectory [virtual]
checkParameters(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::Makeable
checkParameters(const std::vector< Value > &values) const ProtoMol::Makeable
checkParameterTypes(const std::vector< Value > &values) const ProtoMol::Makeable
copy(T *obj)ProtoMol::Makeable [inline, static]
doFinalize(int step)ProtoMol::OutputDCDTrajectory [private, virtual]
doInitialize()ProtoMol::OutputDCDTrajectory [private, virtual]
doMake(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::OutputDCDTrajectory [private, virtual]
doRun(int step)ProtoMol::OutputDCDTrajectory [private, virtual]
finalize(int step)ProtoMol::Output
first() const ProtoMol::Output [inline]
getAlias() const ProtoMol::Makeable
getDefinition() const ProtoMol::Makeable [virtual]
getFirstStep() const ProtoMol::Output [inline]
getId() const ProtoMol::Makeable
getIdNoAlias() const ProtoMol::OutputDCDTrajectory [inline, virtual]
getLastStep() const ProtoMol::Output [inline]
getNext() const ProtoMol::Output [inline]
getOutputFreq() const ProtoMol::Output [inline]
getParameters(std::vector< Parameter > &parameter) const ProtoMol::OutputDCDTrajectory [virtual]
ProtoMol::Output::getParameters() const ProtoMol::Makeable
getParameterSize() const ProtoMol::OutputDCDTrajectory [inline, virtual]
getScope() const ProtoMol::Output [inline, virtual]
getText() const ProtoMol::Makeable [inline, virtual]
initialize(const Configuration *config, const Integrator *integrator, const GenericTopology *topo, const Vector3DBlock *pos, const Vector3DBlock *vel, const ScalarStructure *energies)ProtoMol::Output
isIdDefined(const Configuration *config) const ProtoMol::Output [virtual]
keywordProtoMol::OutputDCDTrajectory [static]
make(std::string &errMsg, const std::vector< Value > &values) const ProtoMol::Output
myCacheProtoMol::Output [protected]
myConfigProtoMol::Output [protected]
myDCDProtoMol::OutputDCDTrajectory [private]
myEnergiesProtoMol::Output [protected]
myIntegratorProtoMol::Output [protected]
myOutputFreqProtoMol::Output [protected]
myPositionsProtoMol::Output [protected]
myTopologyProtoMol::Output [protected]
myVelocitiesProtoMol::Output [protected]
Output()ProtoMol::Output
Output(int freq)ProtoMol::Output
OutputDCDTrajectory()ProtoMol::OutputDCDTrajectory
OutputDCDTrajectory(const std::string &filename, int freq)ProtoMol::OutputDCDTrajectory
run(int step)ProtoMol::Output
scopeProtoMol::Output [static]
setAlias(const std::string &id)ProtoMol::Makeable
setCache(const OutputCache *cache)ProtoMol::Output
~Makeable()ProtoMol::Makeable [inline, virtual]
~OutputDCDTrajectory()ProtoMol::OutputDCDTrajectory [virtual]
Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of Bergen, Norway.