ProtoMol - an object-oriented component based framework for Molecular Dynamics simulations.
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ProtoMol::OutputCache Member List

This is the complete list of members for ProtoMol::OutputCache, including all inherited members.
add(const std::vector< PDB::PDBAtom > &pdbAtoms)ProtoMol::OutputCache [inline]
add(const PSF &psf)ProtoMol::OutputCache [inline]
add(const PAR &par)ProtoMol::OutputCache [inline]
add(const iSGPAR &par)ProtoMol::OutputCache [inline]
angularMomentum() const ProtoMol::OutputCache
brent(Real ax, Real bx, Real cx, Real tol, Real &xmin, int dihindex, bool max) const ProtoMol::OutputCache
brentMaxima(std::vector< int >, bool) const ProtoMol::OutputCache
centerOfMass() const ProtoMol::OutputCache
density() const ProtoMol::OutputCache
diffusion() const ProtoMol::OutputCache
dihedralPhi(int index) const ProtoMol::OutputCache
dihedralPhis(std::vector< int >) const ProtoMol::OutputCache
initialize(const Configuration *config, const Integrator *integrator, const GenericTopology *topo, const Vector3DBlock *pos, const Vector3DBlock *vel, const ScalarStructure *energies)ProtoMol::OutputCache
iSGpar() const ProtoMol::OutputCache [inline]
kineticEnergy() const ProtoMol::OutputCache
linearMomentum() const ProtoMol::OutputCache
mass() const ProtoMol::OutputCache
molecularKineticEnergy() const ProtoMol::OutputCache
molecularPressure() const ProtoMol::OutputCache
molecularTemperature() const ProtoMol::OutputCache
myAngularMomentumProtoMol::OutputCache [mutable, private]
myBrentMaximaProtoMol::OutputCache [mutable, private]
myCachedAngularMomentumProtoMol::OutputCache [mutable, private]
myCachedBrentMaximaProtoMol::OutputCache [mutable, private]
myCachedCenterOfMassProtoMol::OutputCache [mutable, private]
myCachedDensityProtoMol::OutputCache [mutable, private]
myCachedDiffusionProtoMol::OutputCache [mutable, private]
myCachedDihedralPhiProtoMol::OutputCache [mutable, private]
myCachedDihedralPhisProtoMol::OutputCache [mutable, private]
myCachedKEProtoMol::OutputCache [mutable, private]
myCachedLinearMomentumProtoMol::OutputCache [mutable, private]
myCachedMassProtoMol::OutputCache [mutable, private]
myCachedMolKEProtoMol::OutputCache [mutable, private]
myCachedMolPProtoMol::OutputCache [mutable, private]
myCachedMolTProtoMol::OutputCache [mutable, private]
myCachedNonWaterTProtoMol::OutputCache [mutable, private]
myCachedPProtoMol::OutputCache [mutable, private]
myCachedPEProtoMol::OutputCache [mutable, private]
myCachedVProtoMol::OutputCache [mutable, private]
myCachedWaterTProtoMol::OutputCache [mutable, private]
myCenterOfMassProtoMol::OutputCache [mutable, private]
myConfigProtoMol::OutputCache [private]
myDensityProtoMol::OutputCache [mutable, private]
myDiffusionProtoMol::OutputCache [mutable, private]
myDihedralPhiProtoMol::OutputCache [mutable, private]
myDihedralPhisProtoMol::OutputCache [mutable, private]
myEnergiesProtoMol::OutputCache [private]
myInitialPositionsProtoMol::OutputCache [private]
myIntegratorProtoMol::OutputCache [private]
myiSGPARProtoMol::OutputCache [private]
myKEProtoMol::OutputCache [mutable, private]
myLinearMomentumProtoMol::OutputCache [mutable, private]
myMassProtoMol::OutputCache [mutable, private]
myMolKEProtoMol::OutputCache [mutable, private]
myMolPProtoMol::OutputCache [mutable, private]
myMolTProtoMol::OutputCache [mutable, private]
myNonWaterTProtoMol::OutputCache [mutable, private]
myPProtoMol::OutputCache [mutable, private]
myPARProtoMol::OutputCache [private]
myPDBAtomsProtoMol::OutputCache [private]
myPEProtoMol::OutputCache [mutable, private]
myPositionsProtoMol::OutputCache [private]
myPSFProtoMol::OutputCache [private]
myTProtoMol::OutputCache [mutable, private]
myTopologyProtoMol::OutputCache [private]
myVProtoMol::OutputCache [mutable, private]
myVelocitiesProtoMol::OutputCache [private]
myWaterTProtoMol::OutputCache [mutable, private]
OutputCache()ProtoMol::OutputCache
par() const ProtoMol::OutputCache [inline]
pdb() const ProtoMol::OutputCache [inline]
potentialEnergy() const ProtoMol::OutputCache
pressure() const ProtoMol::OutputCache
psf() const ProtoMol::OutputCache [inline]
temperature() const ProtoMol::OutputCache
temperatureForNonWater() const ProtoMol::OutputCache
temperatureForWater() const ProtoMol::OutputCache
time() const ProtoMol::OutputCache
totalEnergy() const ProtoMol::OutputCache
uncache() const ProtoMol::OutputCache
volume() const ProtoMol::OutputCache
~OutputCache()ProtoMol::OutputCache
Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of Bergen, Norway.