| addModifierAfterInitialize() | ProtoMol::Integrator | [inline, protected, virtual] |
| addModifierBeforeInitialize() | ProtoMol::Integrator | [inline, protected, virtual] |
| adjustAlias(T *obj) const | ProtoMol::Makeable | [inline, protected] |
| adjustWithDefaultParameters(std::vector< Value > &values, const Configuration *) const | ProtoMol::Makeable | [inline, virtual] |
| adoptMediForceModifier(Modifier *modifier) | ProtoMol::Integrator | |
| adoptPostDriftOrNextModifier(Modifier *modifier) | ProtoMol::Integrator | |
| adoptPostForceModifier(Modifier *modifier) | ProtoMol::Integrator | |
| adoptPostStepModifier(Modifier *modifier) | ProtoMol::Integrator | |
| adoptPreDriftOrNextModifier(Modifier *modifier) | ProtoMol::Integrator | |
| adoptPreForceModifier(Modifier *modifier) | ProtoMol::Integrator | |
| adoptPreStepModifier(Modifier *modifier) | ProtoMol::Integrator | |
| anyMediForceModify() const | ProtoMol::Integrator | [inline, protected] |
| anyPostDriftOrNextModify() const | ProtoMol::Integrator | [inline, protected] |
| anyPostForceModify() const | ProtoMol::Integrator | [inline, protected] |
| anyPostStepModify() const | ProtoMol::Integrator | [inline, protected] |
| anyPreDriftOrNextModify() const | ProtoMol::Integrator | [inline, protected] |
| anyPreForceModify() const | ProtoMol::Integrator | [inline, protected] |
| anyPreStepModify() const | ProtoMol::Integrator | [inline, protected] |
| backward() | ProtoMol::Integrator | |
| bottom() | ProtoMol::Integrator | |
| bottom() const | ProtoMol::Integrator | |
| checkParameters(std::string &errMsg, const std::vector< Value > &values) const | ProtoMol::Makeable | |
| checkParameters(const std::vector< Value > &values) const | ProtoMol::Makeable | |
| checkParameterTypes(const std::vector< Value > &values) const | ProtoMol::Makeable | |
| copy(T *obj) | ProtoMol::Makeable | [inline, static] |
| createRattleModifier(Real eps, int maxIter) | ProtoMol::Integrator | [virtual] |
| createShakeModifier(Real eps, int maxIter) | ProtoMol::Integrator | [virtual] |
| deleteExternalModifiers() | ProtoMol::Integrator | |
| deleteInternalModifiers() | ProtoMol::Integrator | [protected] |
| forward() | ProtoMol::Integrator | |
| getAlias() const | ProtoMol::Makeable | |
| getBottomTimestep() const | ProtoMol::Integrator | [inline] |
| getDefinition() const | ProtoMol::Makeable | [virtual] |
| getForceGroup() const | ProtoMol::Integrator | [inline] |
| getForces() const | ProtoMol::Integrator | [inline] |
| getId() const | ProtoMol::Makeable | |
| getIdNoAlias() const=0 | ProtoMol::Makeable | [pure virtual] |
| getIntegratorDefinition() const | ProtoMol::Integrator | |
| getIntegratorDefinitionAll() const | ProtoMol::Integrator | |
| getParameters(std::vector< Parameter > ¶meters) const=0 | ProtoMol::Makeable | [pure virtual] |
| getParameters() const | ProtoMol::Makeable | |
| getParameterSize() const=0 | ProtoMol::Makeable | [pure virtual] |
| getScope() const | ProtoMol::Integrator | [inline, virtual] |
| getText() const | ProtoMol::Makeable | [inline, virtual] |
| getTimestep() const=0 | ProtoMol::Integrator | [pure virtual] |
| initialize(GenericTopology *topo, Vector3DBlock *positions, Vector3DBlock *velocities, ScalarStructure *energies) | ProtoMol::Integrator | [virtual] |
| initializeModifiers() | ProtoMol::Integrator | [protected] |
| Integrator() | ProtoMol::Integrator | |
| Integrator(ForceGroup *forceGroup) | ProtoMol::Integrator | |
| isforward() const | ProtoMol::Integrator | [inline] |
| level() const | ProtoMol::Integrator | |
| make(std::string &errMsg, std::vector< Value > values, ForceGroup *fg) const=0 | ProtoMol::NonStandardIntegrator | [pure virtual] |
| mediForceModify() | ProtoMol::Integrator | [protected] |
| myEnergies | ProtoMol::Integrator | [protected] |
| myForces | ProtoMol::Integrator | [protected] |
| myForcesToEvaluate | ProtoMol::Integrator | [protected] |
| myForward | ProtoMol::Integrator | [protected] |
| myPositions | ProtoMol::Integrator | [protected] |
| myTopo | ProtoMol::Integrator | [protected] |
| myVelocities | ProtoMol::Integrator | [protected] |
| next()=0 | ProtoMol::Integrator | [pure virtual] |
| next() const=0 | ProtoMol::Integrator | [pure virtual] |
| NonStandardIntegrator() | ProtoMol::NonStandardIntegrator | [inline] |
| NonStandardIntegrator(ForceGroup *forceGroup) | ProtoMol::NonStandardIntegrator | [inline] |
| postDriftOrNextModify() | ProtoMol::Integrator | [protected] |
| postForceModify() | ProtoMol::Integrator | [protected] |
| postStepModify() | ProtoMol::Integrator | [protected] |
| preDriftOrNextModify() | ProtoMol::Integrator | [protected] |
| preForceModify() | ProtoMol::Integrator | [protected] |
| preStepModify() | ProtoMol::Integrator | [protected] |
| previous()=0 | ProtoMol::Integrator | [pure virtual] |
| previous() const=0 | ProtoMol::Integrator | [pure virtual] |
| removeModifier(const Modifier *modifier) | ProtoMol::Integrator | |
| run(int numTimesteps)=0 | ProtoMol::Integrator | [pure virtual] |
| scope | ProtoMol::Integrator | [static] |
| setAlias(const std::string &id) | ProtoMol::Makeable | |
| size() const | ProtoMol::Integrator | [inline] |
| top() | ProtoMol::Integrator | |
| top() const | ProtoMol::Integrator | |
| uncache() | ProtoMol::Integrator | |
| ~Integrator() | ProtoMol::Integrator | [virtual] |
| ~Makeable() | ProtoMol::Makeable | [inline, virtual] |
Last update: . GNU GENERAL PUBLIC LICENSE, copyrighted by the University of Notre Dame and the University of
Bergen, Norway.
