Biological Networks

Journal articles

  1. H. Jeong, B. Tombor, R. Albert, Z.N. Oltvai, and A.-L. Barabási
    The large-scale organization of metabolic networks
    Nature 407, 651-654 (2000). [ PDF ] [ cond-mat/0010278 ]

  2. H. Jeong, S. Mason, A.-L. Barabási and Zoltan N. Oltvai
    Lethality and centrality in protein networks
    Nature 411, 41-42 (2001). [ PDF ] [ Supplementary Materials  1,   2  ]

  3. R. J. Williams, E. L. Berlow, J. A. Dunne, A.-L. Barabási, and N. D. Martinez
    Two degrees of separation in complex food webs
    Proceedings of the Nat'l Academy of Sciences 99, 12913-12916 (2002). [ PDF ] [ abstract ]

  4. J. Podani, Z.N. Oltvai, H. Jeong, B.Tombor, A.-L. Barabási and E. Szathmáry:
    Comparable system-level organization of Archaea and Eukaryotes
    Nature Genetics 29, 54-56 (2001). [ PDF ] [ cond-mat/0110378 ] [ Supplementary Material ]

  5. Zoltan N. Oltvai and Albert-László Barabási
    Life's complexity pyramid
    Science 298, 763-764 (2002). [ PDF ]

  6. E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, and A.-L. Barabási
    Hierarchical organization of modularity in metabolic networks
    Science 297, 1551-1555 (2002). [ PDF ] [ cond-mat/0209244 ] [ Supplementary Material ]

  7. H. Jeong, Z. N. Oltvai, and A.-L. Barabási
    Prediction of protein essentiality based on genomic data
    ComplexUs 1, 19-28 (2003). [ PDF ] [ Supplementary Material ] [ Article (References) ]

  8. I. Farkas, H. Jeong, T. Vicsek, A.-L. Barabási, and Z.N. Oltvai
    The topology of transcription regulatory network in the yeast, Saccharomyces cerevisiae
    Physica A 318, 601-612 (2003). [ PDF ] [ Supplementary Material ] [ Fig(s). 1, 2, 3 & 4 ]

  9. G. Balázsi, K. A. Kay, A.-L. Barabási and Z. Oltvai
    Spurious spatial periodicity of co-expression in microarray data due to printing design
    Nucleic Acids Research 31, 4425-4433 (2003). [ PDF ] [ Supplementary Material ]

  10. S. Y. Gerdes, M. D. Scholle, J. W. Campbell, G. Balázsi, E. Ravasz, M. D. Daugherty, A. L. Somera, N. C. Kyrpides,  I. Anderson, M. S. Gelfand, A. Bhattacharya, V. Kapatral,  M. D'Souza, M. V. Baev, Y. Grechkin, F. Mseeh, M. Y.  Fonstein, R. Overbeek, A.-L. Barabási, Z. N. Oltvai, and A. L. Osterman
    Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655
    Journal of Bacteriology 185, 5673-5684 (2003). [ PDF ] [ Supplementary Materials  S1, S2,  S6  ] [ Results ] [ Assessments ] [ Foot Printing ]

  11. S. Wuchty, Z. N. Oltvai and A.-L. Barabási
    Evolutionary conservation of motif constituents in the yeast protein interaction network
    Nature Genetics 35, 176-179 (2003). [ PDF ] [ Supplementary Material ] [ News and Views

  12. Z. Dezso, Z. N. Oltvai, and A.-L. Barabási
    Bioinformatics analysis of experimentally determined protein complexes in the yeast saccharomyces cerevisiae
    Genome Research 13, 2450-2454 (2003). [ PDF ] [ Supplementary Material ]

  13. R. Dobrin, Q.K. Beg and A.-L. Barabási
    Aggregation of topological motifs in the Escherichia coli tranascriptional
    BMC Bioinformatics 5: 10 (2004). [ PDF ] [ Supplementary Material ]

  14. Albert-László Barabási and Zoltán N. Oltvai
    Network Biology: Understanding the Cells's Functional Organization
    Nature Reviews Genetics 5, 101-113 (2004). [ PDF ]

  15. S. Y. Yook, Z. N. Oltvai and A.-L. Barabási
    Functional and topological characterization of protein interaction networks
    Proteomics 4, 928-942 (2004). [ PDF ] [ Supplementary Material ]

  16. E. Almaas, B. Kovacs, T. Vicsek, Z.N. Oltvai and A.-L. Barabási
    Global organization of metabolic fluxes in the bacterium Escherichia coli
    Nature 427, 839-843 (2004). [ PDF ] [ Supplementary Material ]

  17. A. Vazquez, R. Dobrin, D. Sergi, J.-P. Eckmann, Z.N. Oltvai, A.-L. Barabási
    The topological relationship between the large-scale attributes and local interactions patterns of complex networks
    Proceedings of the Nat'l Academy of Sciences 101, 17940-17945 (2004). [ PDF ] [ Supplementary Material S1, S2, S3, S4, S5, S6, S7, S8 ]

  18. G. Balázsi, A.-L. Barabási, and Z. N. Oltvai
    Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli
    Proceedings of the Nat'l Academy of Sciences 102: 7841-7846. (2005) [ PDF ] [ Supplementary Material a1, a2, a3, t2, t3, t4, t5 ]

  19. E. Almaas, Z. N. Oltvai and A.-L. Barabási
    The Activity Reaction Core and Plasticity of Metabolic Networks
    PLoS Computational Biology 1, 0557-0563 (2005). [ PDF ] [ Full-Text ] [ Protocol S1 ] [ Table S1 ]

  20. S. Wuchty, A.-L. Barabasi, M.T. Ferdig
    Stable evolutionary signal in a Yeast protein interaction network
    BMC Evolutionary Biology 6: Art. No. 8 (2006). [ PDF ]

  21. J. Lim, T. Hao, C. Shaw, A.J. Patel, G. Szabó , J.-F. Rual, C.J. Fisk, N. Li, A. Smolyar, D.E. Hill, A.-L. Barabási, M. Vidal, H.Y. Zoghbi
    A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration
    Cell 125, 801 (2006). [ PDF ]


December 2006