Developmental Biology

1. Izaguirre, J. A., Chaturvedi, R., Huang, C., Cickovski, T., Coffland, J., Thomas, G., Forgacs, G., Alber, M., Hentschel, G., Newman, S.A., and Glazier, J.A. [2004], CompuCell, a multi-model framework for simulation of morphogenesis, Bioinformatics 20, 1129-1137 (2004).

2. Chaturvedi, R., Jesus A. Izaguirre, J.A., ChengBang H., Cickovski, T., Virtue, P., Thomas, G.,  Forgacs, G., Alber, M., Hentschel,G., Newman, S.A., and  Glazier, J.A., Multi-model simulations of chicken limb morphogenesis,  Lecture Notes in Computer Science, Vol. 2659, Springer-Verlag, New York, (2003) 39-49.

3. Kiskowski, M.A,  Alber, M.S., Thomas, G.L., Glazier, J.A.,  Bronstein, N., Pu, J., and Newman, S.A., Interaction between activator-inhibitor coupling and cell-matrix adhesion in a cellular automaton model for chondrogenic patterning, Developmental Biology 271 (2004) 372—387. ( authors for correspondence:  M.S. Alber and S.A. Newman).

4. Alber, M., Glimm, T., Hentschel, H.G.E., Kazmierczak, B., Newman, S., Stability of n-Dimensional Patterns in a Generalized Turing System: Implications for Biological Pattern Formation, Nonlinearity 18 (2005) 125-138.

5. Alber, M., B. Kazmierczak, H.G.E. Hentschel,  S.A. Newman, Existence of Solutions to a New Model of Biological Pattern Formation, Journal of Mathematical Analysis and Applications 308 1 (2005) 175-194.

6. Chaturvedi, R., C. Huang, J. A. Izaguirre, S. A. Newman, J. A. Glazier, M. Alber, A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of Vertebrate Limb, Lecture Notes in Computer Science, Vol. 3305, Springer-Verlag, New York,  pp. 543-552, 2004.

7. Chaturvedi, R., C. Huang, J. A. Izaguirre, S. A. Newman, J. A. Glazier, M. Alber, On Multiscale Approaches to 3-Dimensional Modeling of Morphogenesis, J. R. Soc. Interface 2 (2005) 237–253.

8. Cickovski, T.,  C. Huang, R. Chaturvedi, T. Glimm, H.G.E. Hentschel, M. Alber, J. A. Glazier, S. A. Newman, J. A. Izaguirre, A Framework for Three-Dimensional Simulation of Morphogenesis, IEEE/ACM Transactions on Computational Biology and Bioinformatics 2, 4 (2005), 273-288.

Myxobacteria

1. Alber, M.S. ,  Kiskowski, A., and Y. Jiang, Lattice gas cellular automata model for rippling and aggregation in myxobacteria, Physica D 191 (2004) 343-358.

2. Alber, M.S. ,  Kiskowski, A., and Y. Jiang, Two-Stage Aggregate Formation via Streams in Myxobacteria, Phys.Rev.Lett. 93 (2004) 068301.

3. Kiskowski, M.A., Y. Jiang, M.S. Alber, Role of Streams in Myxobacteria Aggregate Formation, Physical Biology 1 (2004) 173-183.

4. Sozinova, O., Y. Jiang, D. Kaiser, and M. Alber, A Three-Dimensional Model of Myxobacterial Aggregation by Contact-mediated Interactions, Proc. Natl. Acad. Sci. USA 102 No.32 (2005) 11308–11312.

5. Alber, M.S. ,  Kiskowski, A., Glazier, J.A. and Y. Jiang, On cellular automation approaches to modeling biological cells,  Mathematical Systems Theory in Biology, Communication, and Finance, IMA Volume 132, Springer-Verlag, (2003) pp. 1-40.

6. Alber, M.S., M.A. Kiskowski,  Y. Jiang and S.A. Newman, Biological Lattice Gas Models, in Dynamics and Bifurcation of Patterns in Dissipative Systems, G. Dangelmayr and I. Oprea (eds.), World Scientific Series on Nonlinear Science, Vol.12, World Scientific, Singapore, 2004, pp 274-291.