# firststep 0 numsteps 100000000 outputfreq 100 # Constraints angularMomentum 0 comMotion 0 exclude scaled1-4 seed 1234 posfile minC7eq.pdb psffile alan_mineq.psf parfile par_all27_prot_lipid.inp temperature 300 dcdFile alanlang.dcd boundaryConditions vacuum cellManager Cubic cellsize 5 Integrator { level 0 LangevinImpulse { timestep 1.0 temperature 300 gamma 91 seed 1234 force Improper force Dihedral force Bond force Angle force LennardJones -algorithm NonbondedCutoff -switchingFunction C2 -switchon 15.0 -cutoff 20.0 force CoulombDiElec -D 78 -S 0.3 -algorithm NonbondedCutoff -switchingFunction C2 -switchon 15.0 -cutoff 20.0 } } finXYZPosFile alanlang.out.pos.xyz finXYZVelFile alanlang..out.vel.xyz finPDBPosFile alanlang..out.pdb allenergiesfile alanlang..out.energy