To run CompuCell3D for Windows, you must have .NET installed on your local machine. To make this process easier for the reviewers of ACM TCBB, we have enclosed with this package a copy of the .exe file to installed .NET version 1.1. This is also available at the following site:
SITE
All of the same licenses apply that you agree to upon installation, along with no warranties. .NET is not our software, nor are we claiming it to be. We are enclosing this solely for the purpose of improving ease of running CompuCell3D for ACM TCBB reviewers.
To run CompuCell3D, click either the cellsort.bat, chickenlimb.bat, chickgrowth.bat or dicty.bat icons for the appropriate simulation. Chickgrowth is the validation simulation of our paper.


Included in this package is a version of CompuCell3D that is offered SPECIFICALLY FOR the reviewers of the ACM Transactions on Computational Biology and Bioinformatics (TCBB). It was created solely for the purposes to make it easy on these reviewers to run the software, and save them the trouble of downloading multiple packages.
Libraries included in this package include:
BasicUtils
XercesUtils
XMLCereal
Xerces

BasicUtils, XercesUtils and XMLCereal are covered by the GNU General Public License (GPL), which is found in gpl.txt. We needed to modify BasicUtils slightly for Windows compatibility, and include that version here for the reviewers of ACM TCBB, but with no intention that it will be used by anyone else. All of our modifications to BasicUtils are enclosed in #ifdef WIN32 .... #else .... #endif clauses. Xerces is covered by Apache's license, found in LICENSE.txt. BasicUtils, XercesUtils and XMLCereal (C) 2003 Joseph Coffland, Xerces (C) 1999 Apache Software Foundation, all rights reserved.
BasicUtils, XercesUtils and XMLCereal source code is available on SourceForge (www.sourceforge.net) via anonymous CVS access. Requests will also be honored. No warranties of any kind with anything in this package.
The ogle visualization tool was downloaded from http://www.cora.nwra.com/Ogle/index.html. This is open source software, and all licenses that apply to Ogle apply here as well. We included this solely for the ease of use for reviewers of ACM TCBB, not to distribute freely to everyone.