Download CompuCell is freely distributed under the GPL via SourceForge. Please visit the CompuCell Project Site for the latest downloads and CVS access. Please make sure you visit the CompuCell Wiki, an invaluable source to communicate directly with the developers of CompuCell. Direct Download - Version 2.2.0 * Linux i686 SOURCE TAR.GZ * Linux i686 BINARIES TAR.GZ * Linux FAQ and Troubleshooting (most recent) TEXT Directions to Install and Run CompuCell3D Binaries for Linux 1. Download the .tar.gz file for "Linux i686 BINARIES" above and save it to disk. 2. From the directory where you saved this file, run: 'gunzip CompuCell3D-binaries-i686.tar.gz' 3. From the same directory, run 'tar -xvf CompuCell3D-binaries-i686.tar' 4. Run: 'cd CompuCell3D-2.2.0' 5. Run: './CompuCell3D.sh simname', where simname = cellsort, chicklimb, or chickgrowth for the simulation you want to run. Our validation simulation is chickgrowth.     Output will appear on the screen. Click here for the starting correct outputs to validate your simulation is running properly: cellsort chicklimb chickgrowth irregular 6. After the simulation is finished, the Ogle visualization renderer will appear and visualize results. Click here for image results for validation purposes. cellsort chickenlimb chickgrowth irregular Click here for movie results for validation purposes cellsort chickgrowth irregular

Directions to Compile, Install and Run CompuCell3D Source for Linux

1. Download the .tar.gz file for "Linux i686 SOURCE" above and save it to disk. 2. From this directory (call it D, you'll use it later) where you saved this file, run: 'gunzip CompuCell3D-2.2.0.tar.gz' 3. From the same directory, run 'tar -xvf CompuCell3D-2.2.0.tar' 4. Run: 'cd CompuCell3D-2.2.0' 5. Run: './CompuCell3D.sh simname D', where simname = cellsort, chicklimb, chickgrowth, or irregular for the simulation you want to run and D is the directory path where you initially untarred in step 2. Our validation simulation is chickgrowth for the TCBB paper, and the irregular example runs avian limb development in an irregular domain.     Output will appear on the screen. Click here for the starting correct outputs to validate your simulation is running properly: cellsort chicklimb chickgrowth irregular 6. After the simulation is finished, the Ogle visualization renderer will appear and visualize results. Click here for image results for validation purposes. cellsort chickenlimb chickgrowth irregular Click here for movie results for validation purposes cellsort chickgrowth irregular