Selected Presentations

20. Computational Challenges in Multiscale Modeling and Simulation of Biological Systems (updated pdf)

Institute for Computational and Mathematical Engineering

Stanford University, Stanford, CA, September 26, 2005

19. Comparison of Sampling Techniques Based on Molecular Dynamics (Abstract)

2005 International Conference on Scientific Computation and Differential Equations (SciCADE05)

Nagoya Congress Center, Nagoya, Japan, May 23-27, 2005

18. Prediction of orthologous protein interactions using a set cover approach (Abstract)

Biocomplexity VII Workshop: Unraveling the Function and Kinetics of Biochemical Networks

Indiana University, Bloomington, Indiana, May 9-11, 2005

17. Computational Challenges in Multiscale Modeling and Simulation of Biological Systems (Abstract)

Department of Computer Science and Engineering

Pennsylvania State University

College Station, April 12, 2005

16. Multiscale Molecular Dynamics and Sampling (pdf)

Institute for Mathematics and its Applications (IMA)

University of Minnesota Twin-Cities

Minneapolis, Minnesota, March 8, 2005

15. Three Dimensional Simulation of Morphogenesis (ppt) (html) (pdf)

Information Technology Seminar

Purdue University, West Lafayette, IN, October 12, 2004

14. BioCoRE and GEMS: Cyber Infrastructure for Cyber Chemistry (ppt) (html) (pdf)

Plenary Lecture, NSF Workshop on Cyber-Enabled Chemistry

Arlington, VA, October 3, 2004

13. Parallel multi-grid summation for the N-body problem (ppt)(html)(pdf)

Department of Computer Science and Engineering

University of Notre Dame, IN, October 2, 2003

12. Improved Hybrid Monte Carlo method for conformational sampling (ppt)(html)(pdf)

International Symposium on Scientific Computing and Differential Equations SciCADE 2003

Trondheim, Norway, July 1, 2003

11. MDSimAid: Automatic optimization of fast electrostatics in molecular simulations (ppt)(html)(pdf)

International Conference on Computational Science ICCS 2003

Melbourne, Australia, June 2, 2003

10. Nonlinear Instability in Multiple Time Stepping Molecular Dynamics (ppt)(html)

ACM Symposium on Applied Computing SAC’03

Melbourne, FL, March 10, 2003

9. An improved Hybrid Monte Carlo method for conformational sampling of proteins
(ppt) (html)
Purdue University
Computing Research Institute
CS&E Spring 2003 SEMINAR SERIES, March 5, 2003

8. Evaluation of Fast Electrostatics Algorithms (ppt) (html)

SIAM Conference on Computational Science and Engineering CSE 2003

San Diego, CA, February 10, 2003

7. An Improved Hybrid Monte Carlo for
Conformational Sampling of Large Biomolecules (ppt) (html)

SIAM Conference on Computational Science and Engineering CSE 2003

San Diego, CA, February 10, 2003

6. CompuCell, a multi-model framework for simulation of morphogenesis (html)

SIAM Conference on Computational Science and Engineering CSE 2003

San Diego, CA, February 10, 2003

5. Targeted Langevin Stabilization of Molecular Dynamics (ppt) (html)

SIAM Conference on Computational Science and Engineering CSE 2003

San Diego, CA, February 11, 2003

4. Computational biology and bioinformatics at ND CSE (ppt) (html)

Engineering Advisory Council
University of Notre Dame, October 31, 2002

3. MDSimAid: A Recommender for Molecular Dynamics Simulations (ppt)

Biochemistry Seminar,

University of Notre Dame, April 27, 2002

2. Interactive Molecular Dynamics (ppt)

Supercomputing 2001, Denver, Colorado, November 13, 2001

1. Enhancing the stability of the mollified impulse method (pdf)

International Symposium on Scientific Computing and Differential Equations, SciCADE 2001, Vancouver, Canada, July 31, 2001