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We tested a splitting of the electrostatics using the splitting of
[6] for the short-range electrostatics. The splitting of the
electrostatic force is
 |
(5) |
where
. The implicit part was solved as the minimization
to a dynamics function [74,98]. Since
has been linearized by the splitting, it
can be expressed as the inversion of a sparse linear system. The
resulting matrix is symmetric but indefinite. We solved this system
using a Krylov subspace method, namely a preconditioned conjugate
residual method [5]. Our analysis of time steps possible
predicts that using a splitting cutoff of 12Å time steps of
84fs should be possible [44]. These time steps do not
necessarily correlate with true MD, since we only incorporate the
electrostatic force, but they are encouraging preliminary
results. Also, because of the symmetry and the good behavior of the
splitting, each Krylov step was nearly the same work as a step of
integration using leapfrog. The approach to extend this method is
presented in Section
3.2.
Next: Discussion of method
Up: Multiscale algorithms for molecular
Previous: Splitting of time scales
Jesus Izaguirre
2001-07-27