Final project student research papers, Bioinformatics Computing, Fall 2005:

• Cassone BJ, White BJ and Lobo N, Shotgun sequencing, assembly, and annotation of an Anopheles funestus bacterial artificial chromosome (BAC), Department of Biological Sciences, University of Notre Dame, December 2005.
• J. Scott Breunig , Philip Little and Tim Schoenharl, Hidden Markov Model Search of PiggyBAC Transposons: Insights and Analysis, Departments of Biological Sciences and Computer Science & Engineering, University of Notre Dame, December 2005.
• Robert Bruggner, Ryan Butler and Alec Pauling, Assembly and Annotation of Anopheles Funestus BAC Clone AF1B, Departments of Biological Sciences and Computer Science & Engineering, University of Notre Dame, December 2005.
• Trevor Cickovski, Jim Hogan and Ryan Kennedy, Analysis of P element Transposon Sequences in Aedes aegypti, Departments of Biological Sciences and Computer Science & Engineering, University of Notre Dame, December 2005.
• Faruck Morcos, Jeffrey R. Spies and Irene Kasumba, Assembly and annotation of a BAC clone from a newly sequenced genome of Anopheles funestus,  Departments of Biological Sciences and Computer Science & Engineering, University of Notre Dame, December 2005.
• Danielle Cisler, Sarah Frost and Dongyoung Shin, Identification of piggyBac Transposons in Aedes aegypti, Departments of Biological Sciences, Computer Science & Engineering, and Psychology, University of Notre Dame, December 2005.
• Amy McHenry, Deborah Thomas and Scott Christley, Members of the piggyBac transposon family in Aedes Aegypti, Departments of Biological Sciences and Computer Science & Engineering, University of Notre Dame, December 2005.
• Andrew Sheehan, Nadine Shillingford and E.O. Stinson, Predicted gene content of the 92kb A. funestus BAC 1B assembled sequence, Departments of Biological Sciences and Computer Science & Engineering, University of Notre Dame, December 2005
• Ryan C. Kennedy and Jim Hogan, Using Perl scripts to help identify P element Transposon Sequences in Aedes aegypti, Departments of Biological Sciences and Computer Science & Engineering, University of Notre Dame, December 2005