OOPSE: An Object-Oriented Parallel Simulation
Engine for Molecular Dynamics
Matthew A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
J. Fennell and J. Daniel Gezelter *
Department of Chemistry and Biochemistry
University of Notre Dame
Notre Dame, Indiana 46556
OOPSE is a new molecular dynamics simulation program which is
capable of efficiently integrating equations of motion for atom types
with orientational degrees of freedom (e.g. "sticky" atoms
and point dipoles). Transition metals can also be simulated using the
embedded atom method (EAM) potential included in the code. Parallel
simulations are carried out using the force-based decomposition
method. Simulations are specified using a very simple C-based
meta-data language. A number of advanced integrators are included,
and the basic integrator for orientational dynamics provides
substantial improvements over older quaternion-based schemes.