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Makeflow = Make + WorkflowMakeflow is a workflow engine for executing large complex workflows on clusters, clouds, and grids. Makeflow is very similar to traditional Make, so if you can write a Makefile, then you can write a Makeflow. You can be up and running workflows in a matter of minutes.For example, suppose you want to split a dataset into three pieces, run a simulation on each, and then combine the results. Your Makeflow script would look like this: Condor and SGE batch systems, or the bundled Work Queue system. The same specification works for all systems, so you can easily grow your application from one machine up to thousands. Makeflow differs from other distributed and parallel make tools in that it does not require a distributed filesystem. You can use it to harness whatever machines you have available, and Makeflow handles the data transfer and caching. In addition, Makeflow is highly fault tolerant: it can crash or be killed, and upon resuming, will reconnect to running jobs and continue where it left off. For More InformationPublicationsBiocompute 2.0: An Improved Collaborative Workspace for Data Intensive Bio-Science., Concurrency and Computation: Practice and Experience, 23(17), pages 2305-2314, December, 2011. DOI: 10.1002/cpe.1782
Scripting distributed scientific workflows using Weaver, Concurrency and Computation: Practice and Experience, November, 2011. DOI: 10.1002/cpe.1871
Adapting Bioinformatics Applications for Heterogeneous Systems: A Case Study, Emerging Computational Methods for the Life Sciences Workshop at ACM HPDC, pages 7-13, June, 2011. DOI: 10.1145/1996023.1996025
Taming Complex Bioinformatics Workflows with Weaver, Makeflow, and Starch, Workshop on Workflows in Support of Large Scale Science, pages 1-6, November, 2010. DOI: 10.1109/WORKS.2010.5671858
Harnessing Parallelism in Multicore Clusters with the All-Pairs, Wavefront, and Makeflow Abstractions, Journal of Cluster Computing, 13(3), pages 243-256, September, 2010. DOI: 10.1007/s10586-010-0134-7
Abstractions for Cloud Computing with Condor, Syed Ahson and Mohammad Ilyas, Cloud Computing and Software Services: Theory and Techniques, pages 153-171, CRC Press, July, 2010. ISBN: 9781439803158
Biocompute: Toward a Collaborative Workspace for Data Intensive Bio-Science, Workshop on Emerging Computational Methods for Life Sciences at ACM HPDC 2010, pages 489-498, June, 2010. DOI: 10.1145/1851476.1851547
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