Scott Christley and Greg Madey, "Cultural Dissemination using a Quantum Model", NAACSOS Conference , Pittsburgh, June 2004. (pdf)

Y. Huang, X. Xiang, G. Madey, S. Cabaniss, "Agent-based Scientific Simulation Using Java/Swarm, J2EE, RDBMS and Autonomic Management Technologies", Computing in Science & Engineering , forthcoming (pdf)

G. Madey, "The Computer Experiment in Computational Social Science", Eighth Annual Swarm Research Meeting, University of Michigan, Ann Arbor, MI, May 2004  (abstract)  (slides)

L. Arthurs, P. A. Maurice, X. Xiang, R. Kennedy, G. R. Madey, "Agent-based stochastic simulation of natural organic matter adsorption and mobility in soils", Eleventh International Symposium on Water-Rock Interaction , June 2004 (paper)

Scott Christley, "Dissemination of Culture using a Quantum Model", Understanding Complex Systems Symposium , Urbana-Champaign, IL, May 2004 (abstract)  (slides)

Tim Schoenharl, "Agent Based Exploration of Self-Organizing Neural Networks", Understanding Complex Systems Symposium, Urbana-Champaign, IL, May 2004  (abstract)  (slides)

G. Madey, "An Investigation into the Free/Open Source Software Phenomenon using Data Mining, Social Network Theory, and Agent-Based Simulation" (invited presenation), NFS Workshop on Continuous (Re)Design of Open Source Software, Urbana-Champaign, October 2003. (abstract) (slides) (position-paper)

Michael Kirkpatrick and Greg Madey, "Simulation of Swarm Intelligence-Based Message Broadcast in Highly Mobile Ad Hoc Networks", 2004 Communication Networks and Distributed Systems Modeling and Simulation Conference (CNDS'04) [at the 2004 Western Simulation MultiConference (WMC'04)], San Diego, January 2004 (pdf)  (slides)

Yongqin Gao, Topology and Evolution of the Open Source Software Community, Master's Thesis, University of Notre Dame, Notre Dame, IN, October 2003. (thesis) (slides)

T. Schoenharl and G. Madey, "Using Agent-Based Modeling in the Exploration of Self-Organizing Neural Networks", Workshop on Agent and Swarm Programming (WASP2003), Cleveland, OH, October 2003 (paper)  (slides)

J. Xu, Y. Huang, and G. Madey, "A Research Support System Framework for Web Datamining Research", Workshop on Applications, Products and Services of Web-based Support Systems at the Joint International Conference on Web Intelligence (2003 IEEE/WIC) and Intelligent Agent Technology, Halifax, Canada, October 2003, pp. 37-41. (paper)  (slides)

J. Xu, Y. Gao, J. Goett, and G. Madey, "A Multi-Model Docking Experiment of Dynamic Social Network Simulations", Agents2003, Chicago, IL, October 2003 (paper) (slides)

Greg Madey, Vincent Freeh, Renee Tynan, Yongqin Gao, Chris Hoffman, "Agent-based Modeling and Simulation of Collaborative Social Networks", AMCIS 2003, Tampa, FL, August 2003. (paper)  (slides)

Yongqin Gao, Vince Freeh, and Greg Madey, "Conceptual Framework for Agent-based Modeling and Simulation", NAACSOS Conference 2003, Pittsburgh, June 2003. (paper)  (slides)

Jin Xu, Yongqin Gao and Greg Madey, "A Docking Experiment: Swarm and Repast for Social Network Modeling", Seventh Annual Swarm Researchers Meeting (Swarm2003), Notre Dame, IN, April 2003. (paper)  (slides)

Bren Mochocki and Greg Madey, H-MAS: A Heterogeneous, Mobile, Ad-Hoc Sensor-Network Simulation Environment, Seventh Annual Swarm Researchers Meeting (Swarm2003), Notre Dame, IN, 2003  (pdf)

Yongqin Gao, Vince Freeh, and Greg Madey, "Modeling and Simulation of  the OSS Community", Seventh Annual Swarm Researchers Meeting (Swarm2003), Notre Dame, IN, April 2003. (paper) (slides)

G. Madey,  Freeh, V., Tynan, R., and Hoffman, C., "An Analysis of Open Source Software Development Using Social Network Theory and Agent-Based Modeling". The 2nd Lake Arrowhead Conference on Human Complex Systems. Lake Arrowhead, CA, USA, 2003 (abstract) (slides)

Xiaorong Xiang, Yingping Huang, Greg Madey and Steve Cabaniss, "A Web-based Collaboratory for Supporting Environmental Science Research", Workshop on Applications, Products and Services of Web-based Support Systems at the Joint International Conference on Web Intelligence (2003 IEEE/WIC) and Intelligent Agent Technology, Halifax, Canada, October 2003, pp. 29-36. (paper) (slides)

Leilani Arthurs, Patricia Maurice, Xiaorong Xiang, Greg Madey,and Yingping Huang, "Agent-based simulation of biocomplexity: Effects of adsorption on natural organic mobility through soils", American Chemical Society National Meeting, New York, Sept 2003. (abstract)  (slides)

Xiaorong Xiang, Greg Madey, Yingping Huang and Steve Cabaniss, "A Stochastic Simulation of Natural Organic Matter and Microbes in the Environment", 2003 World Conference on Natural Resource Modeling, (June, 2003) (abstract) (slides)

Xiaorong Xiang, Agent-based Scientific Applications and Collaboration Using JAVA, Master's Thesis, University of Notre Dame, Notre Dame, IN, May 2003 (thesis) (slides.ppt)  (slides.pdf)

Greg Madey and Patricia Maurice, "Agent-Based Simulation of Biocomplexity: Interactions of Natural Organic Matter, Mineral Surfaces, and Microorganisms", Indiana Biocomplexity Symposium, Notre Dame, IN, April 22, 2003. (slides.ppt.)  (slides.pdf)

Yingping Huang, Gregory Madey, Xiaorong Xiang, Eric Chanowich, "Web-based Molecular Modeling using Java/Swarm, J2EE, and RDBMS Technologies", Seventh Annual Swarm Researchers Meeting (Swarm2003), Notre Dame, IN, April 13, 2003. (Also presented at the Indiana Biocomplexity Symposium, Notre Dame, IN, April 22, 2003).(paper)  (slides)

Xiaorong Xiang and Greg Madey, "Exploring performance improvement for Java-based scientific simulations that use the Swarm Toolkit", Seventh Annual Swarm Researchers Meeting (Swarm2003), Notre Dame, IN, April 13, 2003. (Also presented at the Indiana Biocomplexity Symposium, Notre Dame, IN, April 22, 2003). (paper)  (slides)

Madey, G., Huang, Y., Xiang, X., Chanowich, E., Cabaniss, S. and Maurice, P., "Simulation of Biocomplexity: Interactions of NOM, Mineral Surfaces, and Microorganisms in Soils". ASLO 2003 - Aquatic Sciences Meeting. Salt Lake City, UT, 2003 (abstract) (slides)

Madey, G., Huang, Y., Xiang, X., Chanowich, E., Cabaniss, S. and Maurice, P., "Complex system simulation: interactions of NOM molecules, mineral surfaces, and microorganisms in the soil",. Workshop on Modeling Complex Systems . Reno, NV: US Geological Survey, 2002. (abstract)  (slides)

G. Madey,  Freeh, V., and Tynan, R. "Agent-Based Modeling of Open Source using Swarm. Americas Conference on Information Systems" (AMCIS2002). Dallas, TX, 2002. pp. 1472-1475 (paper)

Madey, G., "Using Java and Swarm to Build a Stochastic Simulation of Natural Organic Matter (NOM) and Microbe Interactions in the Soil", Sixth Annual Swarm Researchers Meeting (Swarm2002), Seatle, WA, 2002. (slides)

Poster Presentations

Leilani Arthurs, "Agent-based simulations of biocomplexity: Effects of adsorption to natural organic mobility through soils", NDEER2003, Notre Dame, IN, November 2003

Ryan Kennedy, Leilani Arthurs, Patricia Maurice, Yingping Huang, Greg Madey "Stochastic Simulation of NOM with RePast:  A Visualization", NDEER2003, Notre Dame, IN, November 2003  (slides)

Ryan Kennedy, "Decentralized Message Routing in Mobile Networks", Seventh Annual Swarm Researchers Meeting (Swarm2003), Notre Dame, IN, April 13, 2003. (slides)

Leilani Arthurs, Patricia Maurice, Gregory Madey, Xiaorong Xiang, and Yingping Huang, "Simulation of natural organic matter adsorption to soils: A preliminary report", Indiana Biocomplexity Symposium, Notre Dame, IN, April 2003 (slides)

Y. Huang, X. Xiang, E. Chanowich, and G. Madey, "A Web-Based Stochastic Simulation of Natural Organic Matter", Notre Dame Environmental Education and Research (NDEER) Symposium, South Bend, IN, November 2002 (slides)

Working Papers & Papers Under Review

L. Arthurs, P. A. Maurice, X. Xiang, R. Kennedy, G. R. Madey, "Agent-based stochastic simulation of natural organic matter adsorption and mobility in soils", Oct 2003 (paper)

Y. Gao, V. Freeh, and G. Madey, "Modeling and Simulation of a Complex Social System: A Case Study", Oct 20003 (pdf)

X. Xiang, Y. Huang, G. Madey, "Exploring Performance Improvement for Java-based Scientific Simulations", Oct 2003  (paper)

REU Student Papers/Projects

Ryan Kennedy, University of Notre Dame (Summer 2003)

• Using RePast and JAVA to Enhance the NOM Project: A Report (pdf)
• Using RePast and JAVA to Enhance the NOM Project: Documentation (pdf)

Eric Chanowich, University of Notre Dame (Summer 2002/ Spring 2003)

• 3D NOM Simulation: A Design (paper)
• A Comparison of Probablility Calculations (paper)
• Digging into Digital Soil: REU Report from Summer 2002  (paper)  (slides)

Jeff Goett, University of Notre Dame (Spring 2004)

• J. Goett, "An Approach to Verifying the Implementation of a Simulation Using a Docking Process," Senior Honor Thesis, University of Notre Dame, Notre Dame, IN, April 2004. (pdf)

• Final Research Paper (pdf)
• Final Research Paper Appendix (pdf)

• C. Hoffman, "Toward an Agent Based Model of Open Source Software Development", Summer REU Project, University of Notre Dame, 2002. (pdf)

• Decentralized Message Routing in Mobile Networks (pdf)

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